
#find ./ -name "sketch" -exec rm -r "{}" \;
#find ./ -name "distance" -exec rm -r "{}" \;

import sys, os, shutil, glob, gzip
os.chdir(os.path.split(os.path.realpath(__file__))[0])

suffix = " > /dev/null 2>&1"
dir = "__results__"

K = [21, 31]
FILTER = ["", "-filter"]
NB_READS = ["0", "100"]
NB_KMERS = ["100", "1000"]
NB_CORES = [1, 0]

def create_command(scriptFilename, outputPrefix, k, filter, nb_reads, nb_kmers, nb_cores, input_filename):
    outputDir = "k" + str(k) + "_" + filter.replace("-", "") + "_" + str(nb_reads) + "-" + str(nb_kmers) + "_n" + str(nb_cores)
    command = "python  " + scriptFilename
    command += " -in " + input_filename
    command += " -out " + outputPrefix + "/" + outputDir
    command += " -nb-cores " + str(nb_cores)
    command += " -max-memory 100 "
    command += " -kmer-size " + str(k)
    command += " -nb-kmers " + str(nb_kmers)
    command += " -bin ../../build/bin/simkaMinCore "
    command += " -max-reads " + str(nb_reads)
    command += " " + filter + " "
    return command, outputDir

def create_command_update(scriptFilename, outputPrefix, k, filter, nb_reads, nb_kmers, nb_cores, input_filename):
    outputDir = "k" + str(k) + "_" + filter.replace("-", "") + "_" + str(nb_reads) + "-" + str(nb_kmers) + "_n" + str(nb_cores)
    command = "python  " + scriptFilename
    command += " -in " + input_filename
    command += " -in-to-update " + outputPrefix + "/" + outputDir
    command += " -nb-cores " + str(nb_cores)
    command += " -max-memory 100 "
    #command += " -kmer-size " + str(k)
    #command += " -nb-kmers " + str(nb_kmers)
    command += " -bin ../../build/bin/simkaMinCore "
    command += " -max-reads " + str(nb_reads)
    command += " " + filter + " "
    return command, outputDir

def create_truth():
    for k in K:
        for filter in FILTER:
            for nb_reads in NB_READS:
                for nb_kmers in NB_KMERS:
                    for nb_cores in NB_CORES:
                        command, outputDir = create_command("../../simkaMin/simkaMin.py", "truth_simkaMin", k, filter, nb_reads, nb_kmers, nb_cores, " ../../example/simka_input.txt ")
                        print (command)
                        ret = os.system(command)
                        if ret != 0: exit(1)

#create_truth()
#exit(1)

def clear():
    #if os.path.exists("temp_output"):
    #    shutil.rmtree("temp_output")
    if os.path.exists("__results__"):
        shutil.rmtree("__results__")
    os.mkdir(dir)

def decompress_simka_results(dir):
    result_filenames = glob.glob(os.path.join(dir, '*.csv.gz'))
    for filename_gz in result_filenames:
        os.system("gunzip "+filename_gz)
        #filename_gz = result_dir + "/" + filename
        # with gzip.open(filename_gz, 'rb') as f:
        #     outFile = open(filename_gz[:-3], "w")
        #     outFile.write(str(f.read()))
        #     outFile.close()
        #     os.remove(filename_gz)

def __test_matrices(result_dir, truth_dir):

    ok = True

    # print(result_dir + " " + truth_dir)
    decompress_simka_results(result_dir)
    result_filenames = glob.glob(os.path.join(result_dir, '*.csv'))
    if len(result_filenames) == 0:
        print("Error: no results")
        exit(1)

    decompress_simka_results(truth_dir)
    truth_filenames = glob.glob(os.path.join(truth_dir, '*.csv'))

    #if simka_vs_truth:
    #    truth_filenames = glob.glob(os.path.join(truth_dir, '*.csv'))
    #else: #simka vs simka
    #    #if result_dir+"/mat_abundance_jaccard.csv" in truth_filenames: #comparing simka results vs simka results
    #    #truth_filenames.remove(result_dir+"/mat_abundance_jaccard.csv") #This distance is computed from Bray Curtis distance
    #
    #    truth_filenames = glob.glob(os.path.join(truth_dir, '*.csv'))

    truth_filenames.sort()
    result_filenames.sort()

    for result_filename in result_filenames:
        distanceName = os.path.split(result_filename)[1]
        for truth_filename in truth_filenames:
            distanceName2 = os.path.split(truth_filename)[1]
            if distanceName != distanceName2: continue

            res_file = open(result_filename, "r")
            truth_file = open(truth_filename, "r")

            # print (res_file, truth_file)
            res_str = res_file.read()
            truth_str = truth_file.read()

            res_file.close()
            truth_file.close()

            if(res_str != truth_str):
                print("\t- TEST ERROR:    " + distanceName)
                print("res")
                print(res_str)
                print("truth")
                print(truth_str)
                ok = False
                sys.exit(1)

    return ok


def test_dists(dir):
    if(__test_matrices("__results__/" + dir, "truth_simkaMin/" + dir)):
        print("\tOK")
    else:
        print("\tFAILED")
        exit(1)


#----------------------------------------------------------------
#----------------------------------------------------------------
#----------------------------------------------------------------
clear()

def test():
    for k in K:
        for filter in FILTER:
            for nb_reads in NB_READS:
                for nb_kmers in NB_KMERS:
                    for nb_cores in NB_CORES:
                        command, outputDir = create_command("../../simkaMin/simkaMin.py", dir, k, filter, nb_reads, nb_kmers, nb_cores, " ../../example/simka_input.txt ")
                        print (command)
                        ret = os.system(command + suffix)
                        if ret != 0: exit(1)
                        test_dists(outputDir)
                        clear()



#----------------------------------------------------------------
#----------------------------------------------------------------
#----------------------------------------------------------------
def test_append():
    print("Test append command")
    clear()

    out_dir = "./test_append"
    if os.path.exists(out_dir):
        shutil.rmtree(out_dir)
    os.mkdir(out_dir)

    merged_sketch_filename = os.path.join(out_dir, "merged_sketch.bin")
    filename = "../../example/simka_input.txt"
    for line in open(filename):
        line = line.strip()
        if len(line) == 0: continue

        filename_temp = os.path.join("../../example/test_simkaMin_input_temp.txt")
        f = open(filename_temp, "w")
        f.write(line)
        f.close()

        sketch_filename = os.path.join(out_dir, "sketch.bin")
        command = "../../build/bin/simkaMinCore sketch -in " + filename_temp + " -out " + sketch_filename + " -nb-kmers 100 -kmer-size 21 -nb-cores 4"
        print(command)
        ret = os.system(command + suffix)
        if ret != 0: exit(1)


        if os.path.exists(merged_sketch_filename):
            command = "../../build/bin/simkaMinCore append -in1 " + merged_sketch_filename + " -in2 " + sketch_filename
            print(command)
            ret = os.system(command + suffix)
            if ret != 0: exit(1)
            os.remove(sketch_filename)
        else:
            shutil.move(sketch_filename, merged_sketch_filename)

        os.remove(filename_temp)

    command = "../../build/bin/simkaMinCore distance -in1 " +  merged_sketch_filename + " -in2 " + merged_sketch_filename + " -out " + dir + " -nb-cores 4 "
    print(command)
    ret = os.system(command + suffix)
    if ret != 0: exit(1)

    command = "../../build/bin/simkaMinCore export -in " + dir + " -in1 " +  merged_sketch_filename + " -in2 " + merged_sketch_filename + " -out " + dir
    print(command)
    ret = os.system(command + suffix)
    if ret != 0: exit(1)


    if(__test_matrices(dir, "truth_simkaMin/k21__0-100_n0")):
        print("\tOK")
    else:
        print("\tFAILED")
        exit(1)

#----------------------------------------------------------------
#----------------------------------------------------------------
#----------------------------------------------------------------
def test_matrix_update():
    print("Test update command")
    clear()

    out_dir = "./test_matrix_update"
    if os.path.exists(out_dir):
        shutil.rmtree(out_dir)
    os.mkdir(out_dir)

    init = False
    filename = "../../example/simka_input.txt"
    for line in open(filename):
        line = line.strip()
        if len(line) == 0: continue

        filename_temp = os.path.join("../../example/test_simkaMin_input_temp.txt")
        f = open(filename_temp, "w")
        f.write(line)
        f.close()

        if init:
            command, outputDir = create_command_update("../../simkaMin/simkaMin_update.py", out_dir, 21, "", 0, 100, 4, filename_temp)
            print(command)
            ret = os.system(command + suffix)
            if ret != 0: exit(1)
        else:
            command, outputDir = create_command("../../simkaMin/simkaMin.py", out_dir, 21, "", 0, 100, 4, filename_temp)
            print(command)
            ret = os.system(command + suffix)
            if ret != 0: exit(1)
            init= True


    if(__test_matrices(out_dir + "/k21__0-100_n4", "truth_simkaMin/k21__0-100_n0" )):
        print("\tOK")
    else:
        print("\tFAILED")
        exit(1)

test()
test_append()
test_matrix_update()


if os.path.exists("__results__"):
    shutil.rmtree("__results__")
if os.path.exists("test_append"):
    shutil.rmtree("test_append")
if os.path.exists("test_matrix_update"):
    shutil.rmtree("test_matrix_update")
