@HD	VN:1.4
@SQ	SN:insert	LN:599
@SQ	SN:ref1|this=that	LN:45
@SQ	SN:ref2*HLA:1a:2:b	LN:40
@SQ	SN:ref3	LN:4
@SQ	SN:ref1	LN:45
@RG	ID:fish	PG:donkey
@RG	ID:cow	PU:13_&^&&*(:332
@RG	PU:*9u8jkjjkjd:	ID:colt
@RG	ID:fish-[1]	PG:llama_{a}
@RG	ID:cow-[2]	PU:13_&^&&*(:332	PG:donkey-6ADB4A65
@RG	PU:*9u8jkjjkjd:	ID:colt-55424A4
@PG	ID:bull	PP:donkey
@PG	ID:donkey
@PG	ID:moose
@PG	PP:moose	ID:cow
@PG	ID:llama_{a}
@PG	ID:bull-3A2CCEF5	PP:donkey-6ADB4A65
@PG	ID:donkey-6ADB4A65
@CO	
@CO	Do you know?
r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
r001	163	ref1|this=that	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish
r002	0	ref1|this=that	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
r003	0	ref1|this=that	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
r004	0	ref1|this=that	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt
r003	16	ref1|this=that	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow
r001	83	ref1|this=that	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish
x1	0	ref2*HLA:1a:2:b	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:colt	PG:Z:bull
x7	0	ref2*HLA:1a:2:b	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow-[2]	PG:Z:bull-3A2CCEF5
x2	0	ref2*HLA:1a:2:b	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
x8	0	ref2*HLA:1a:2:b	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow-[2]	PG:Z:bull-3A2CCEF5
x3	0	ref2*HLA:1a:2:b	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
x9	0	ref2*HLA:1a:2:b	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow-[2]	PG:Z:bull-3A2CCEF5
x4	0	ref2*HLA:1a:2:b	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
x10	0	ref2*HLA:1a:2:b	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow-[2]	PG:Z:bull-3A2CCEF5
x5	0	ref2*HLA:1a:2:b	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
x11	0	ref2*HLA:1a:2:b	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow-[2]	PG:Z:bull-3A2CCEF5
x6	0	ref2*HLA:1a:2:b	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
x12	0	ref2*HLA:1a:2:b	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow-[2]	PG:Z:bull-3A2CCEF5
r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt-55424A4	PG:Z:donkey-6ADB4A65
r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt-55424A4	PG:Z:donkey-6ADB4A65
r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt-55424A4	PG:Z:donkey-6ADB4A65
r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt-55424A4	PG:Z:donkey-6ADB4A65
r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt-55424A4	PG:Z:donkey-6ADB4A65
r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt-55424A4	PG:Z:donkey-6ADB4A65
u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
