@HD	VN:1.5	SO:coordinate
@SQ	SN:vir1	LN:800
@SQ	SN:vir2	LN:900
@RG	ID:12345_1#2
@PG	ID:samtools	PN:samtools	VN:1.12-9-g9b3bf13	CL:samtools ampliconclip --both-ends -O sam -b test/ampliconstats/vir.bed test/ampliconstats/mixed.sam
read_1	163	vir1	55	60	25S185M	=	201	331	ACCCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTT	CC<CCFGGEGGGGGGGGEFDFCEFGGGGGGG<FFDGFGGGGGEDGG8FGGGFFGGGFGCFFFFGGGGGFGDFDCFCE<E9FFCGGG9FFFECFGFGGFCFGFFGGFGFGFGFCA<FCFFGFGGGEGFGC=DEGGGDCFE8BFGGGGDGGFFEEDF5AF8,FEFCFFCGFGGGCGCDGGGFCDGGGF9DFFE+++87:<DCFCB3,@,,3>	AS:i:208	XS:i:0	RG:Z:12345_1#2	MQ:i:60	MC:Z:185M25S
read_2	99	vir1	55	60	24S186M	=	201	331	ACCCCCCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTT	8888ACFGGGGFFFGGGGGGGFGGGGGGGGGFGGGGGGGGGDGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGGGGGGGAFGGGGGGGGGGGGGGGGGCFFGGGFDGFFGGGGGGGGGGGGGGGGGGFCFGGGGGGGGAFFGEGGFFGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGFGGGEGEGCFGGGGGGDGGGFGGGG	AS:i:205	XS:i:0	BC:Z:TGGGCCTA-ACTCCTAC	QT:Z:CCCCCFGF CCCCCGGG	RG:Z:12345_1#2	MQ:i:60	MC:Z:185M25S
read_3	161	vir1	132	60	189M21S	=	201	254	ATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACG	CCCCCGFGGGGGGFFGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGGGGGGGGFGGGFGGGDGGGG@FFEGGFGGEGGGGGGGGGGGGGGGGGFFGDFDGGGDGEG9F@FCFGFGGGGGGCFGGGGGCFAFBAFEGGGGFFFGFGFGGGGG<EGGGE	AS:i:210	XS:i:0	RG:Z:12345_1#2	MQ:i:60	MC:Z:185M25S
read_1	83	vir1	201	60	185M25S	=	55	-331	TTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATG	F@=7DFFGFECC@F>:<BFFF;CFGGFBFCGF9E@EFC:7CCFFBFFGGFGGGGGGFF9?GGGGGGGGFGFF@CFGGGFB?<F8GFFGDGFF<9GFE,AFFFCEGFGGGGGGGGGGGGGGGFDFGGGGGGEEGGGGGGGGGGGGDGGGEGGGGGGGGGGFFFGGGGGGGGGF<CGGCGDGGGGGFFCGGGGGGGGFGGGGGGGFFCCCCC	AS:i:210	XS:i:0	BC:Z:TGGGCCTA-ACTCCTAC	QT:Z:9CCCCGGG CCCCCGG<	RG:Z:12345_1#2	MQ:i:60	MC:Z:25S185M
read_2	147	vir1	201	60	185M25S	=	55	-331	TTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGGAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATG	C*DGCEDCGFFFF7>:7GGECFCFGFCCDACGFCD:FC>EEGGGF:B39FBCF>GFF9GDC,GGFDGFGDFDGGGFFF7@7GFFGFFF?GDGFE9GFGGFFEGFCGGFDEDGFDGGGGGGFGFF9FGFGFGCF7@+7GGGGGGECEGFGGE8FEFFE9F9GGGCEFCGGFFGGGGFCGDGFEFDFEDF9GFDEGGGGCGGFCGDE@CCCC	AS:i:205	XS:i:0	RG:Z:12345_1#2	MQ:i:60	MC:Z:24S186M
read_3	81	vir1	201	60	185M25S	=	132	-254	TTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATG	GGGGGGGGGGGGEEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGFCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCCCC	AS:i:210	XS:i:0	BC:Z:TGGGCCTA-ACTCCTAC	QT:Z:CCCCCGGG CCCCCGGG	RG:Z:12345_1#2	MQ:i:60	MC:Z:189M21S
read_4	97	vir1	411	60	90S120M	=	517	294	CGAAATTACAGGTTCTCTCCTTGCTCTTCCTTTTCTTTTTCTCCTCCTTTTCTTCTTTCTTCTCCTCTTCCCTTCCCCCTCTTCCCGATGGCACTTGTGGCTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAAACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGG	86---;=;=6;;;;CCFEFGFE6;;=<CFGGFFEF-6,<;CCFGAFGEEEFEEFGGGEGFFFFGGFGEFFFFFEFFGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGEEEEGGGGGFGGGGGGGGGGGGGGGGGFGFFGGFGGGGGGFGGGGGGGGGGGGGGGGGGFFFGGGGGGGGGEDGGGGGGGGGGGGGG	AS:i:124	XS:i:0	BC:Z:TGGGCCTA-ACTCCTAC	QT:Z:CCCCCGGG CCCCCGGG	RG:Z:12345_1#2	MQ:i:60	MC:Z:188M22S
read_4	145	vir1	517	60	188M22S	=	411	-294	TATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTCGTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGGCGAAATACCAGTGGCTTACCGCAAGGTTCTTCTTCGTAAGAACGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGATCCTTA	GGE@D,GFGFGGGGGGGGCF@FCFB9CD@CGGGGGFCGGGGGGGGGGGGGFFBDCGGFFGFDGGFFBCGFE7GGGGGGGGGGGGGGGCGGGGGGGGFFDGF@FBFGGGGFEFEFFCGGFFEGCCE@GGGGGGGFDGCF@GGGGGGGGGGGGFEEGGGGGGGGGGGGGGGGGGGGGGGGGGG?GGGDGGGGGGGGGGGGFGGGGGGCCCCC	AS:i:210	XS:i:0	RG:Z:12345_1#2	MQ:i:60	MC:Z:90S120M
V2_1_a	97	vir2	36	60	26S265M29S	=	36	265	TTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTAC	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:26S265M29S
V2_1_b	97	vir2	36	60	26S74M	=	210	265	TTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATG	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:91M29S
V2_1_a	145	vir2	36	60	26S265M29S	=	36	-265	TTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTAC	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:26S265M29S
V2_1_c	161	vir2	41	60	20S171M	=	128	260	CAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGT	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:173M27S
V2_1_c	81	vir2	128	60	173M27S	=	41	-260	TATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTT	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:20S171M
V2_1_b	145	vir2	210	60	91M29S	=	36	-265	GTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTAC	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:26S74M
V2_3_a	97	vir2	421	60	19S141M	=	723	430	TTAAAGATGGCACTTGTGGCTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAAACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTCG	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:128M32S
V2_3_b	97	vir2	421	60	20S240M	=	621	430	CTTAAAGATGGCACTTGTGGCTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAAACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTCGTAGTGGTGAGACACTTGGTGTCCTTGTCCCTCATGTGGGCGAAATACCAGTGGCTTACCGCAAGGTTCTTCTTCGTAAGAACGGTAATAAAGGAGCTGG	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:230M30S
V2_3_b	145	vir2	621	60	230M30S	=	421	-430	GCAAGGTTCTTCTTCGTAAGAACGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGATCCTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTGTTACCCGTGAACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGGCCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTA	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:20S240M
V2_3_a	145	vir2	723	60	128M32S	=	421	-430	CTTATGAAGATTTTCAAGAAAACTGGAACACTAAACATAGCAGTGGTGTTACCCGTGAACTCATGCGTGAGCTTAACGGAGGGGCATACACTCGCTATGTCGATAACAACTTCTGTGGCCCTGATGGCTACCCTCTTGAGTGCATTAAAGACCTTCTAGC	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MQ:i:60	MC:Z:19S141M
