from .ttree import BasicUISettings, BasicUIParseArgs, EraseTemplateFiles, \
    StackableCommand, PopCommand, PopRightCommand, PopLeftCommand, \
    PushCommand, PushLeftCommand, PushRightCommand, ScopeCommand, \
    WriteVarBindingsFile, StaticObj, InstanceObj, ExtractFormattingCommands, \
    BasicUI, ScopeBegin, ScopeEnd, WriteFileCommand, Render

from .ttree_lex import TtreeShlex, split, LineLex, SplitQuotedString, \
    EscCharStrToChar, SafelyEncodeString, RemoveOuterQuotes, MaxLenStr, \
    HasWildcard, HasRE, InputError, ErrorLeader, SrcLoc, OSrcLoc, TextBlock, \
    VarRef, VarNPtr, VarBinding, SplitTemplate, SplitTemplateMulti, \
    TableFromTemplate, ExtractCatName, DeleteLinesWithBadVars, TemplateLexer

from .nbody_graph_search import Disconnected, NotUndirected, Edge, Vertex, \
     Dgraph, Ugraph, SortVertsByDegree, DFS, GraphMatcher 

from .nbody_by_type_lib import GenInteractions_int, GenInteractions_str

from .lttree import LttreeSettings, LttreeParseArgs, TransformAtomText, \
    TransformEllipsoidText, AddAtomTypeComments, ExecCommands, WriteFiles

from .lttree_styles import AtomStyle2ColNames, ColNames2AidAtypeMolid, \
    ColNames2Coords, ColNames2Vects, ColNames2Vects, data_atoms, data_masses

from .ettree_styles import \
    LinesWSlashes, SplitMultiDelims, SplitAtomLine, \
    iEsptAtomCoords, iEsptAtomVects, iEsptAtomType, iEsptAtomID

from .ttree_matrix_stack import MultMat, MatToStr, LinTransform, \
    AffineTransform, AffineCompose, CopyMat, ScaleMat, RotMatAXYZ, \
    CrossProd, DotProd, Length, Normalize, RotMatXYZXYZ, MultiAffineStack

# Stand-alone executable scripts
from .ttree import main
from .lttree import main
from .ettree import main
from .ttree_render import main
from .ltemplify import main, Ltemplify
from .dump2data import main
from .raw2data import main
from .extract_lammps_data import main
from .mol22lt import main, ConvertMol22Lt
from .amber2lt import main, ConvertAmber2Lt, ConvertAmberSections2Lt, ConvertAtomDescr2Lt, ConvertMass2Lt, ConvertBond2Lt, ConvertAngle2Lt, ConvertDihedral2Lt, ConvertImproper2Lt, ConvertPair2Lt
from .genpoly_lt import main, GenPoly, GPSettings
from .genpoly_modify_lt import main, GenPolyMod, GPModSettings, DistributePeriodic, DistributeRandom
from .interpolate_curve import main, ResampleCurve, CalcNaturalCubicSplineCoeffs, SplineEval, SplineEvalD1, SplineEvalD2, SplineInterpEval, SplineInterpEvalD1, SplineInterpEvalD2, SplineCurvature2D, SplineInterpCurvature2D
from .nbody_by_type import main

__all__ = [# General modules for parsing and rendering text templates:
           'ttree','ttree_lex','ttree_render',
           # General modules for handling force-fields:
           'nbody_graph_search','nbody_by_type_lib','nbody_by_type',
           'nbody_Angles','nbody_Bonds','nbody_Dihedrals','nbody_Impropers',
           'nbody_reorder_atoms',
           # Coordinate transformations:
           'ttree_matrix_stack',
           'recenter_coords',
           'mol22lt',
           'genpoly_lt',
           'interpolate_curve',
           'pdbsort',
           # LAMMPS specific:
           'lttree','lttree_styles','lttree_check','lttree_postprocess',
           'dump2data', 'raw2data',
           'extract_lammps_data',
           'ltemplify',
           'postprocess_coeffs','postprocess_input_script',
           'renumber_DATA_first_column',
           'remove_duplicate_atoms','remove_duplicates_nbody',
           'bonds_by_type','charge_by_bond',
           # ESPResSo specific:
           'ettree','ettree_styles','extract_espresso_atom_types']
