P7Forward_xmx	P7Forward_alloca_xmx
P7Forward_mmx	P7Forward_alloca_mmx
P7Forward_imx	P7Forward_alloca_imx
P7Forward_dmx	P7Forward_alloca_dmx
P7ViterbiTrace_tr	P7ViterbiTrace_alloca_tr
P7SmallViterbi_ctr	P7SmallViterbi_alloca_ctr
P7SmallViterbi_tr	P7SmallViterbi_alloca_tr
P7ParsingViterbi_tr	P7ParsingViterbi_alloca_tr
P7ParsingViterbi_xmx	P7ParsingViterbi_alloca_xmx
P7ParsingViterbi_mmx	P7ParsingViterbi_alloca_mmx
P7ParsingViterbi_dmx	P7ParsingViterbi_alloca_dmx
P7ParsingViterbi_imx	P7ParsingViterbi_alloca_imx
P7ParsingViterbi_xtr	P7ParsingViterbi_alloca_xtr
P7ParsingViterbi_mtr	P7ParsingViterbi_alloca_mtr
P7ParsingViterbi_dtr	P7ParsingViterbi_alloca_dtr
P7ParsingViterbi_itr	P7ParsingViterbi_alloca_itr
P7WeeViterbi_tr	P7WeeViterbi_alloca_tr
P7WeeViterbi_k2	P7WeeViterbi_alloca_k2
P7WeeViterbi_t2	P7WeeViterbi_alloca_t2
P7WeeViterbi_s2	P7WeeViterbi_alloca_s2
Plan7ESTViterbi_xmx	Plan7ESTViterbi_alloca_xmx
Plan7ESTViterbi_mmx	Plan7ESTViterbi_alloca_mmx
Plan7ESTViterbi_imx	Plan7ESTViterbi_alloca_imx
Plan7ESTViterbi_dmx	Plan7ESTViterbi_alloca_dmx
P7ViterbiAlignAlignment_xmx	P7ViterbiAlignAlignment_alloca_xmx
P7ViterbiAlignAlignment_mmx	P7ViterbiAlignAlignment_alloca_mmx
P7ViterbiAlignAlignment_imx	P7ViterbiAlignAlignment_alloca_imx
P7ViterbiAlignAlignment_dmx	P7ViterbiAlignAlignment_alloca_dmx
P7ViterbiAlignAlignment_xtb	P7ViterbiAlignAlignment_alloca_xtb
P7ViterbiAlignAlignment_mtb	P7ViterbiAlignAlignment_alloca_mtb
P7ViterbiAlignAlignment_itb	P7ViterbiAlignAlignment_alloca_itb
P7ViterbiAlignAlignment_dtb	P7ViterbiAlignAlignment_alloca_dtb
ShadowTrace_tr	ShadowTrace_alloca_tr
PostprocessSignificantHit_tarr	PostprocessSignificantHit_alloca_tarr
PostprocessSignificantHit_ntr	PostprocessSignificantHit_alloca_ntr
PostprocessSignificantHit_k1	PostprocessSignificantHit_alloca_k1
PostprocessSignificantHit_k2	PostprocessSignificantHit_alloca_k2
PostprocessSignificantHit_i1	PostprocessSignificantHit_alloca_i1
PostprocessSignificantHit_i2	PostprocessSignificantHit_alloca_i2
get_wee_midpt_xmx	get_wee_midpt_alloca_xmx
get_wee_midpt_mmx	get_wee_midpt_alloca_mmx
get_wee_midpt_imx	get_wee_midpt_alloca_imx
get_wee_midpt_dmx	get_wee_midpt_alloca_dmx
DisplayPlan7Posteriors_alignment	DisplayPlan7Posteriors_alloca_alignment
PrintTransition_src_str	PrintTransition_alloca_src_str
PrintTransition_dest_str	PrintTransition_alloca_dest_str
EmitSequence_tr	EmitSequence_alloca_tr
EmitSequence_t	EmitSequence_alloca_t
EmitConsensusSequence_tr	EmitConsensusSequence_alloca_tr
EmitConsensusSequence_mp	EmitConsensusSequence_alloca_mp
EmitConsensusSequence_ip	EmitConsensusSequence_alloca_ip
EmitConsensusSequence_dp	EmitConsensusSequence_alloca_dp
P7Viterbi_tr	P7Viterbi_alloca_tr
P7Viterbi_xmx	P7Viterbi_alloca_xmx
P7Viterbi_mmx	P7Viterbi_alloca_mmx
P7Viterbi_imx	P7Viterbi_alloca_imx
P7Viterbi_dmx	P7Viterbi_alloca_dmx
PrintASCIIHistogram_buffer	PrintASCIIHistogram_alloca_buffer
EVDBasicFit_slope	EVDBasicFit_alloca_slope
EVDBasicFit_intercept	EVDBasicFit_alloca_intercept
EVDBasicFit_corr	EVDBasicFit_alloca_corr
ExtremeValueFitHistogram_lambda	ExtremeValueFitHistogram_alloca_lambda
ExtremeValueFitHistogram_mu	ExtremeValueFitHistogram_alloca_mu
EVDCensoredFit_fx	EVDCensoredFit_alloca_fx
EVDCensoredFit_dfx	EVDCensoredFit_alloca_dfx
EVDMaxLikelyFit_fx	EVDMaxLikelyFit_alloca_fx
EVDMaxLikelyFit_dfx	EVDMaxLikelyFit_alloca_dfx
HMMFileOpen_magic	HMMFileOpen_alloca_magic
HMMFileOpen_buf	HMMFileOpen_alloca_buf
HMMFileOpen_dir	HMMFileOpen_alloca_dir
HMMFilePositionByName_offset	HMMFilePositionByName_alloca_offset
HMMFilePositionByName_fh	HMMFilePositionByName_alloca_fh
HMMFilePositionByIndex_fh	HMMFilePositionByIndex_alloca_fh
HMMFilePositionByIndex_offset	HMMFilePositionByIndex_alloca_offset
P7OptimalAccuracyTrace_tr	P7OptimalAccuracyTrace_alloca_tr
read_bin20hmm_type	read_bin20hmm_alloca_type
read_bin20hmm_magic	read_bin20hmm_alloca_magic
read_bin19hmm_magic	read_bin19hmm_alloca_magic
read_bin19hmm_hmm	read_bin19hmm_alloca_hmm
read_bin17hmm_magic	read_bin17hmm_alloca_magic
read_bin17hmm_hmm	read_bin17hmm_alloca_hmm
read_bin11hmm_magic	read_bin11hmm_alloca_magic
read_bin11hmm_hmm	read_bin11hmm_alloca_hmm
read_bin10hmm_magic	read_bin10hmm_alloca_magic
read_bin10hmm_hmm	read_bin10hmm_alloca_hmm
read_asc20hmm_buffer	read_asc20hmm_alloca_buffer
read_asc19hmm_buffer	read_asc19hmm_alloca_buffer
read_asc17hmm_hmm	read_asc17hmm_alloca_hmm
read_asc17hmm_buffer	read_asc17hmm_alloca_buffer
write_bin_string_len	write_bin_string_alloca_len
read_plan9_binhmm_M	read_plan9_binhmm_alloca_M
read_plan9_binhmm_len	read_plan9_binhmm_alloca_len
read_plan9_binhmm_asize	read_plan9_binhmm_alloca_asize
read_plan9_binhmm_atype	read_plan9_binhmm_alloca_atype
read_plan9_binhmm_abet	read_plan9_binhmm_alloca_abet
read_plan9_aschmm_buffer	read_plan9_aschmm_alloca_buffer
read_bin_string_len	read_bin_string_alloca_len
hmmcalibrate_hmm	hmmcalibrate_alloca_hmm
hmmcalibrate_hist	hmmcalibrate_alloca_hist
hmmcalibrate_max	hmmcalibrate_alloca_max
hmmcalibrate_optname	hmmcalibrate_alloca_optname
hmmcalibrate_optarg	hmmcalibrate_alloca_optarg
hmmcalibrate_optind	hmmcalibrate_alloca_optind
main_loop_serial_randomseq	main_loop_serial_alloca_randomseq
main_loop_serial_p1	main_loop_serial_alloca_p1
main_hmm	main_alloca_hmm
main_ali	main_alloca_ali
main_sc	main_alloca_sc
main_pvalue	main_alloca_pvalue
main_motherp	main_alloca_motherp
main_mothersc	main_alloca_mothersc
main_sqfrom	main_alloca_sqfrom
main_sqto	main_alloca_sqto
main_hmmfrom	main_alloca_hmmfrom
main_hmmto	main_alloca_hmmto
main_name	main_alloca_name
main_sqlen	main_alloca_sqlen
main_nseq	main_alloca_nseq
main_domidx	main_alloca_domidx
main_ndom	main_alloca_ndom
main_thresh	main_alloca_thresh
main_optname	main_alloca_optname
main_optarg	main_alloca_optarg
main_optind	main_alloca_optind
reg_flags	reg_alloca_flags
main_loop_serial313_tr	main_loop_serial313_alloca_tr
main_loop_serial313_seq	main_loop_serial313_alloca_seq
main_loop_serial313_sqinfo	main_loop_serial313_alloca_sqinfo
TraceScoreCorrection_p	TraceScoreCorrection_alloca_p
TraceScoreCorrection_sc	TraceScoreCorrection_alloca_sc
P7Maxmodelmaker_cij	P7Maxmodelmaker_alloca_cij
P7Maxmodelmaker_tij	P7Maxmodelmaker_alloca_tij
P7Maxmodelmaker_matp	P7Maxmodelmaker_alloca_matp
P7Maxmodelmaker_insp	P7Maxmodelmaker_alloca_insp
P7Maxmodelmaker_insc	P7Maxmodelmaker_alloca_insc
matassign2hmm_tr	matassign2hmm_alloca_tr
PAMPrior_pam	PAMPrior_alloca_pam
PAMPrior_scale	PAMPrior_alloca_scale
P7PriorifyHMM_tq	P7PriorifyHMM_alloca_tq
P7PriorifyHMM_mq	P7PriorifyHMM_alloca_mq
P7PriorifyHMM_iq	P7PriorifyHMM_alloca_iq
P7PriorifyTransitionVector_mix	P7PriorifyTransitionVector_alloca_mix
P7PriorifyEmissionVector_mix	P7PriorifyEmissionVector_alloca_mix
Plan7SetCtime_date	Plan7SetCtime_alloca_date
P7OptimalAccuracy_forward	P7OptimalAccuracy_alloca_forward
P7OptimalAccuracy_backward	P7OptimalAccuracy_alloca_backward
P7Backward_xmx	P7Backward_alloca_xmx
P7Backward_mmx	P7Backward_alloca_mmx
P7Backward_imx	P7Backward_alloca_imx
P7Backward_dmx	P7Backward_alloca_dmx
P7FillOptimalAccuracy_tr	P7FillOptimalAccuracy_alloca_tr
ReadA2M_buf	ReadA2M_alloca_buf
ReadA2M_len1	ReadA2M_alloca_len1
ReadA2M_len2	ReadA2M_alloca_len2
WriteA2M_buf	WriteA2M_alloca_buf
ComparePairAlignments_klist1	ComparePairAlignments_alloca_klist1
ComparePairAlignments_klist2	ComparePairAlignments_alloca_klist2
ComparePairAlignments_tlist1	ComparePairAlignments_alloca_tlist1
ComparePairAlignments_tlist2	ComparePairAlignments_alloca_tlist2
ComparePairAlignments_len1	ComparePairAlignments_alloca_len1
ComparePairAlignments_len2	ComparePairAlignments_alloca_len2
ComparePairAlignments_score	ComparePairAlignments_alloca_score
CompareRefPairAlignments_klist1	CompareRefPairAlignments_alloca_klist1
CompareRefPairAlignments_klist2	CompareRefPairAlignments_alloca_klist2
CompareRefPairAlignments_tlist1	CompareRefPairAlignments_alloca_tlist1
CompareRefPairAlignments_tlist2	CompareRefPairAlignments_alloca_tlist2
CompareRefPairAlignments_len1	CompareRefPairAlignments_alloca_len1
CompareRefPairAlignments_len2	CompareRefPairAlignments_alloca_len2
CompareRefPairAlignments_score	CompareRefPairAlignments_alloca_score
MajorityRuleConsensus_count	MajorityRuleConsensus_alloca_count
PrintFancyAli_buffer	PrintFancyAli_alloca_buffer
MasterTraceFromMap_tr	MasterTraceFromMap_alloca_tr
sqd_regexec_ex	sqd_regexec_alloca_ex
regbranch_flags	regbranch_alloca_flags
regpiece_flags	regpiece_alloca_flags
regatom_flags	regatom_alloca_flags
WritePairwiseAlignment_sname1	WritePairwiseAlignment_alloca_sname1
WritePairwiseAlignment_sname2	WritePairwiseAlignment_alloca_sname2
WritePairwiseAlignment_buf1	WritePairwiseAlignment_alloca_buf1
WritePairwiseAlignment_bufmid	WritePairwiseAlignment_alloca_bufmid
WritePairwiseAlignment_buf2	WritePairwiseAlignment_alloca_buf2
ReadClustal_s	ReadClustal_alloca_s
ReadClustal_slen	ReadClustal_alloca_slen
WriteClustal_buf	WriteClustal_alloca_buf
PrintNewHampshireTree_code	PrintNewHampshireTree_alloca_code
ParsePAMFile_buffer	ParsePAMFile_alloca_buffer
ParsePAMFile_order	ParsePAMFile_alloca_order
EnvFileOpen_full	EnvFileOpen_alloca_full
GSIOpen_magic	GSIOpen_alloca_magic
GSIGetOffset_name	GSIGetOffset_alloca_name
GSIGetOffset_offset	GSIGetOffset_alloca_offset
GSIGetOffset_filenum	GSIGetOffset_alloca_filenum
GSIGetOffset_fmt	GSIGetOffset_alloca_fmt
GSIWriteHeader_key	GSIWriteHeader_alloca_key
GSIWriteHeader_f1	GSIWriteHeader_alloca_f1
GSIWriteHeader_f2	GSIWriteHeader_alloca_f2
GSIWriteFileRecord_f1	GSIWriteFileRecord_alloca_f1
GSIWriteFileRecord_f2	GSIWriteFileRecord_alloca_f2
GSIWriteKeyRecord_f1	GSIWriteKeyRecord_alloca_f1
GSIWriteKeyRecord_f2	GSIWriteKeyRecord_alloca_f2
sqd_regcomp_flags	sqd_regcomp_alloca_flags
sqd_regcomp_co	sqd_regcomp_alloca_co
IsSELEXFormat_buffer	IsSELEXFormat_alloca_buffer
MSAFileOpen_dir	MSAFileOpen_alloca_dir
MSAFilePositionByKey_fh	MSAFilePositionByKey_alloca_fh
MSAFilePositionByKey_offset	MSAFilePositionByKey_alloca_offset
MSAFilePositionByIndex_fh	MSAFilePositionByIndex_alloca_fh
MSAFilePositionByIndex_offset	MSAFilePositionByIndex_alloca_offset
ReadMSF_sp	ReadMSF_alloca_sp
ReadMSF_slen	ReadMSF_alloca_slen
WriteMSF_now	WriteMSF_alloca_now
WriteMSF_date	WriteMSF_alloca_date
WriteMSF_buffer	WriteMSF_alloca_buffer
ReadPhylip_s	ReadPhylip_alloca_s
ReadPhylip_name	ReadPhylip_alloca_name
ReadPhylip_slen	ReadPhylip_alloca_slen
WritePhylip_buf	WritePhylip_alloca_buf
rkcomp_coded	rkcomp_alloca_coded
ReadSELEX_buffer	ReadSELEX_alloca_buffer
ReadSELEX_bufcpy	ReadSELEX_alloca_bufcpy
ReadSELEX_base_ainfo	ReadSELEX_alloca_base_ainfo
StrDPShuffle_Z	StrDPShuffle_alloca_Z
StrMarkov0_p	StrMarkov0_alloca_p
StrMarkov1_p	StrMarkov1_alloca_p
Die_argp	Die_alloca_argp
Warn_argp	Warn_alloca_argp
SeqfileFormat_buf	SeqfileFormat_alloca_buf
SeqfileFormat_len	SeqfileFormat_alloca_len
SeqfileFormat_s	SeqfileFormat_alloca_s
WriteSimpleFASTA_buf	WriteSimpleFASTA_alloca_buf
WriteSeq_endstr	WriteSeq_alloca_endstr
WriteSeq_s	WriteSeq_alloca_s
WriteSeq_ss	WriteSeq_alloca_ss
readLoop_addend	readLoop_alloca_addend
SSIGetOffsetByName_fnum	SSIGetOffsetByName_alloca_fnum
SSIGetOffsetByNumber_fnum	SSIGetOffsetByNumber_alloca_fnum
SSIGetSubseqOffset_len	SSIGetSubseqOffset_alloca_len
SSIWriteIndex_cmd	SSIWriteIndex_alloca_cmd
SSIWriteIndex_buf	SSIWriteIndex_alloca_buf
SSIWriteIndex_buflen	SSIWriteIndex_alloca_buflen
SSIWriteIndex_pkey	SSIWriteIndex_alloca_pkey
SSIWriteIndex_skey	SSIWriteIndex_alloca_skey
SSIWriteIndex_buf337	SSIWriteIndex_alloca_buf337
SSIWriteIndex_n	SSIWriteIndex_alloca_n
load_indexfile_magic	load_indexfile_alloca_magic
read_i16_result	read_i16_alloca_result
indexfile_position_pos	indexfile_position_alloca_pos
read_i32_result	read_i32_alloca_result
write_i32_n.addr	write_i32_alloca_n.addr
write_i16_n.addr	write_i16_alloca_n.addr
write_i64_n.addr	write_i64_alloca_n.addr
parse_pkey_info_s	parse_pkey_info_alloca_s
parse_pkey_info_n	parse_pkey_info_alloca_n
parse_skey_info_s	parse_skey_info_alloca_s
parse_skey_info_n	parse_skey_info_alloca_n
read_i64_result	read_i64_alloca_result
FreeIntStack_data	FreeIntStack_alloca_data
parse_gf_s	parse_gf_alloca_s
parse_gs_s	parse_gs_alloca_s
parse_gc_s	parse_gc_alloca_s
parse_gc_len	parse_gc_alloca_len
parse_gr_len	parse_gr_alloca_len
parse_gr_s	parse_gr_alloca_s
parse_comment_s	parse_comment_alloca_s
parse_sequence_s	parse_sequence_alloca_s
parse_sequence_len	parse_sequence_alloca_len
actually_write_stockholm_s	actually_write_stockholm_alloca_s
GSCWeights_dmx	GSCWeights_alloca_dmx
GSCWeights_tree	GSCWeights_alloca_tree
VoronoiWeights_dmx	VoronoiWeights_alloca_dmx
VoronoiWeights_symseen	VoronoiWeights_alloca_symseen
BlosumWeights_c	BlosumWeights_alloca_c
BlosumWeights_nc	BlosumWeights_alloca_nc
PositionBasedWeights_rescount	PositionBasedWeights_alloca_rescount
