SeqfileLineParameters_6	SeqfileLineParameters_ret_bpl
SeqfileLineParameters_7	SeqfileLineParameters_ret_rpl
set_degenerate_conv	set_degenerate_arrayidx
DigitizeSequence_conv1	DigitizeSequence_arrayidx
DigitizeSequence_conv1	DigitizeSequence_arrayidx3
DigitizeSequence_conv8	DigitizeSequence_arrayidx10
DedigitizeSequence_2	DedigitizeSequence_arrayidx7
DigitizeAlignment_call5	DigitizeAlignment_arrayidx
DigitizeAlignment_conv6	DigitizeAlignment_arrayidx9
ResizePlan7Matrix_add.ptr94	ResizePlan7Matrix_arrayidx97
DigitizeAlignment_conv63	DigitizeAlignment_arrayidx67
DigitizeAlignment_conv69	DigitizeAlignment_arrayidx73
DigitizeAlignment_2	DigitizeAlignment_ret_dsqs
P7CountSymbol_add	P7CountSymbol_arrayidx
P7CountSymbol_add17	P7CountSymbol_arrayidx16
DefaultGeneticCode_conv8	DefaultGeneticCode_arrayidx10
CreatePlan7Matrix_3	CreatePlan7Matrix_xmx
CreatePlan7Matrix_5	CreatePlan7Matrix_mmx
CreatePlan7Matrix_7	CreatePlan7Matrix_imx
CreatePlan7Matrix_9	CreatePlan7Matrix_dmx
CreatePlan7Matrix_call18	CreatePlan7Matrix_xmx_mem
CreatePlan7Matrix_call24	CreatePlan7Matrix_mmx_mem
CreatePlan7Matrix_call30	CreatePlan7Matrix_imx_mem
CreatePlan7Matrix_call36	CreatePlan7Matrix_dmx_mem
CreatePlan7Matrix_15	CreatePlan7Matrix_arrayidx
CreatePlan7Matrix_18	CreatePlan7Matrix_arrayidx41
CreatePlan7Matrix_21	CreatePlan7Matrix_arrayidx44
CreatePlan7Matrix_24	CreatePlan7Matrix_arrayidx47
CreatePlan7Matrix_add.ptr	CreatePlan7Matrix_arrayidx53
CreatePlan7Matrix_add.ptr59	CreatePlan7Matrix_arrayidx62
CreatePlan7Matrix_add.ptr68	CreatePlan7Matrix_arrayidx71
CreatePlan7Matrix_add.ptr77	CreatePlan7Matrix_arrayidx80
ResizePlan7Matrix_add	ResizePlan7Matrix_maxN5
ResizePlan7Matrix_7	ResizePlan7Matrix_xmx8
ResizePlan7Matrix_11	ResizePlan7Matrix_mmx14
ResizePlan7Matrix_15	ResizePlan7Matrix_imx20
ResizePlan7Matrix_19	ResizePlan7Matrix_dmx26
ResizePlan7Matrix_add32	ResizePlan7Matrix_maxM33
ResizePlan7Matrix_call39	ResizePlan7Matrix_xmx_mem40
ResizePlan7Matrix_call46	ResizePlan7Matrix_mmx_mem47
ResizePlan7Matrix_call53	ResizePlan7Matrix_imx_mem54
ResizePlan7Matrix_call60	ResizePlan7Matrix_dmx_mem61
ResizePlan7Matrix_31	ResizePlan7Matrix_arrayidx
ResizePlan7Matrix_34	ResizePlan7Matrix_arrayidx66
ResizePlan7Matrix_37	ResizePlan7Matrix_arrayidx69
ResizePlan7Matrix_40	ResizePlan7Matrix_arrayidx72
ResizePlan7Matrix_add.ptr	ResizePlan7Matrix_arrayidx79
ResizePlan7Matrix_add.ptr85	ResizePlan7Matrix_arrayidx88
P7Forward_add237	P7Forward_arrayidx236
ResizePlan7Matrix_add.ptr103	ResizePlan7Matrix_arrayidx106
ResizePlan7Matrix_54	ResizePlan7Matrix_xmx
ResizePlan7Matrix_55	ResizePlan7Matrix_mmx
ResizePlan7Matrix_56	ResizePlan7Matrix_imx
ResizePlan7Matrix_57	ResizePlan7Matrix_dmx
AllocPlan7Matrix_0	AllocPlan7Matrix_xmx
AllocPlan7Matrix_1	AllocPlan7Matrix_mmx
AllocPlan7Matrix_2	AllocPlan7Matrix_imx
AllocPlan7Matrix_3	AllocPlan7Matrix_dmx
AllocShadowMatrix_3	AllocShadowMatrix_xtb2
AllocShadowMatrix_5	AllocShadowMatrix_mtb6
AllocShadowMatrix_7	AllocShadowMatrix_itb10
AllocShadowMatrix_9	AllocShadowMatrix_dtb14
AllocShadowMatrix_11	AllocShadowMatrix_esrc
AllocShadowMatrix_call21	AllocShadowMatrix_arrayidx
AllocShadowMatrix_call26	AllocShadowMatrix_arrayidx28
AllocShadowMatrix_call33	AllocShadowMatrix_arrayidx35
AllocShadowMatrix_call40	AllocShadowMatrix_arrayidx42
AllocShadowMatrix_add.ptr	AllocShadowMatrix_arrayidx48
AllocShadowMatrix_add.ptr54	AllocShadowMatrix_arrayidx57
AllocShadowMatrix_add.ptr63	AllocShadowMatrix_arrayidx66
AllocShadowMatrix_add.ptr72	AllocShadowMatrix_arrayidx75
AllocShadowMatrix_32	AllocShadowMatrix_xtb
AllocShadowMatrix_33	AllocShadowMatrix_mtb
AllocShadowMatrix_34	AllocShadowMatrix_itb
AllocShadowMatrix_35	AllocShadowMatrix_dtb
P7Forward_3	P7Forward_arrayidx5
P7Forward_call80	P7Forward_arrayidx84
P7Forward_add95	P7Forward_arrayidx94
P7Forward_call118	P7Forward_arrayidx122
P7Forward_call143	P7Forward_arrayidx147
P7Forward_add159	P7Forward_arrayidx158
P7Forward_call217	P7Forward_arrayidx222
P7ViterbiTrace_i.0	P7ViterbiTrace_arrayidx479
P7Forward_add245	P7Forward_arrayidx248
P7Forward_call267	P7Forward_arrayidx270
P7Forward_call289	P7Forward_arrayidx292
P7Forward_call307	P7Forward_arrayidx310
P7Forward_call326	P7Forward_arrayidx329
P7Forward_call	P7Forward_ret_mx
P7ViterbiTrace_k.1	P7ViterbiTrace_arrayidx71
P7ViterbiTrace_k.0	P7ViterbiTrace_arrayidx107
P7ViterbiTrace_i.0	P7ViterbiTrace_arrayidx111
P7ViterbiTrace_k.0	P7ViterbiTrace_arrayidx130
P7ViterbiTrace_i.0	P7ViterbiTrace_arrayidx134
P7ViterbiTrace_k.0	P7ViterbiTrace_arrayidx154
P7ViterbiTrace_k.0	P7ViterbiTrace_arrayidx197
P7ViterbiTrace_i.0	P7ViterbiTrace_arrayidx201
P7ViterbiTrace_k.0	P7ViterbiTrace_arrayidx226
P7ViterbiTrace_k.0	P7ViterbiTrace_arrayidx271
P7ViterbiTrace_i.0	P7ViterbiTrace_arrayidx275
P7ViterbiTrace_k.0	P7ViterbiTrace_arrayidx294
P7ViterbiTrace_i.0	P7ViterbiTrace_arrayidx298
P7ViterbiTrace_i.0	P7ViterbiTrace_arrayidx351
P7ViterbiTrace_dk.0	P7ViterbiTrace_arrayidx457
P7ViterbiTrace_k.3	P7ViterbiTrace_arrayidx475
get_wee_midpt_add1012	get_wee_midpt_arrayidx1023
get_wee_midpt_add1040	get_wee_midpt_arrayidx1039
get_wee_midpt_add1055	get_wee_midpt_arrayidx1062
P7ViterbiTrace_i.0	P7ViterbiTrace_arrayidx523
P7ViterbiTrace_i.0	P7ViterbiTrace_arrayidx586
P7ViterbiTrace_tpos.0	P7ViterbiTrace_tlen
P7ViterbiTrace_282	P7ViterbiTrace_ret_tr
P7SmallViterbi_add47	P7SmallViterbi_tlen48
P7SmallViterbi_pos.0	P7SmallViterbi_arrayidx73
P7SmallViterbi_43	P7SmallViterbi_arrayidx97
P7SmallViterbi_48	P7SmallViterbi_arrayidx105
P7SmallViterbi_add124	P7SmallViterbi_arrayidx127
P7SmallViterbi_conv140	P7SmallViterbi_arrayidx143
P7SmallViterbi_pos.1	P7SmallViterbi_arrayidx179
P7SmallViterbi_pos.2	P7SmallViterbi_arrayidx205
P7SmallViterbi_98	P7SmallViterbi_ret_tr
P7ParsingViterbi_8	P7ParsingViterbi_arrayidx12
P7ParsingViterbi_add61	P7ParsingViterbi_arrayidx67
P7ParsingViterbi_43	P7ParsingViterbi_arrayidx76
P7ParsingViterbi_add87	P7ParsingViterbi_arrayidx98
P7ParsingViterbi_59	P7ParsingViterbi_arrayidx107
P7ParsingViterbi_add114	P7ParsingViterbi_arrayidx125
P7ParsingViterbi_sub126	P7ParsingViterbi_arrayidx130
P7ParsingViterbi_add142	P7ParsingViterbi_arrayidx153
P7ParsingViterbi_87	P7ParsingViterbi_arrayidx162
P7ParsingViterbi_add186	P7ParsingViterbi_arrayidx185
P7ParsingViterbi_add206	P7ParsingViterbi_arrayidx213
P7ParsingViterbi_115	P7ParsingViterbi_arrayidx222
P7ParsingViterbi_add234	P7ParsingViterbi_arrayidx245
P7ParsingViterbi_131	P7ParsingViterbi_arrayidx254
P7ParsingViterbi_add272	P7ParsingViterbi_arrayidx279
P7ParsingViterbi_147	P7ParsingViterbi_arrayidx287
P7ParsingViterbi_add297	P7ParsingViterbi_arrayidx308
P7ParsingViterbi_163	P7ParsingViterbi_arrayidx316
P7ParsingViterbi_add340	P7ParsingViterbi_arrayidx339
P7ParsingViterbi_add360	P7ParsingViterbi_arrayidx366
P7ParsingViterbi_add382	P7ParsingViterbi_arrayidx391
P7ParsingViterbi_202	P7ParsingViterbi_arrayidx397
P7ParsingViterbi_add411	P7ParsingViterbi_arrayidx417
P7ParsingViterbi_213	P7ParsingViterbi_arrayidx423
P7ParsingViterbi_add431	P7ParsingViterbi_arrayidx440
P7ParsingViterbi_i.0	P7ParsingViterbi_arrayidx443
P7ParsingViterbi_add454	P7ParsingViterbi_arrayidx460
P7ParsingViterbi_add470	P7ParsingViterbi_arrayidx479
P7ParsingViterbi_246	P7ParsingViterbi_arrayidx484
P7ParsingViterbi_add495	P7ParsingViterbi_arrayidx501
P7ParsingViterbi_257	P7ParsingViterbi_arrayidx507
P7ParsingViterbi_add515	P7ParsingViterbi_arrayidx524
P7ParsingViterbi_i.0	P7ParsingViterbi_arrayidx527
P7ParsingViterbi_i.1	P7ParsingViterbi_arrayidx556
P7ParsingViterbi_287	P7ParsingViterbi_arrayidx565
P7ParsingViterbi_add575	P7ParsingViterbi_tlen
P7ParsingViterbi_301	P7ParsingViterbi_ret_tr
P7WeeViterbi_7	P7WeeViterbi_arrayidx17
P7WeeViterbi_14	P7WeeViterbi_arrayidx36
P7WeeViterbi_16	P7WeeViterbi_arrayidx38
P7WeeViterbi_8	P7WeeViterbi_arrayidx60
P7WeeViterbi_21	P7WeeViterbi_arrayidx62
P7WeeViterbi_25	P7WeeViterbi_arrayidx82
P7WeeViterbi_11	P7WeeViterbi_arrayidx84
P7WeeViterbi_dec96	P7WeeViterbi_s2
P7WeeViterbi_33	P7WeeViterbi_arrayidx108
P7WeeViterbi_inc112	P7WeeViterbi_s2
P7WeeViterbi_k.0	P7WeeViterbi_arrayidx264
P7WeeViterbi_91	P7WeeViterbi_arrayidx281
P7WeeViterbi_i.1	P7WeeViterbi_arrayidx284
P7WeeViterbi_k.1	P7WeeViterbi_arrayidx320
P7WeeViterbi_k.2	P7WeeViterbi_arrayidx369
P7WeeViterbi_136	P7WeeViterbi_arrayidx407
P7WeeViterbi_i.1	P7WeeViterbi_arrayidx410
P7WeeViterbi_i.1	P7WeeViterbi_arrayidx421
P7WeeViterbi_i.1	P7WeeViterbi_arrayidx432
P7WeeViterbi_add449	P7WeeViterbi_tlen450
P7WeeViterbi_162	P7WeeViterbi_ret_tr
Plan7ESTViterbi_3	Plan7ESTViterbi_arrayidx5
Plan7ESTViterbi_add26	Plan7ESTViterbi_arrayidx28
Plan7ESTViterbi_add34	Plan7ESTViterbi_arrayidx36
Plan7ESTViterbi_add122	Plan7ESTViterbi_arrayidx126
Plan7ESTViterbi_add138	Plan7ESTViterbi_arrayidx149
Plan7ESTViterbi_add157	Plan7ESTViterbi_arrayidx168
Plan7ESTViterbi_add181	Plan7ESTViterbi_arrayidx192
Plan7ESTViterbi_add202	Plan7ESTViterbi_arrayidx201
Plan7ESTViterbi_add216	Plan7ESTViterbi_arrayidx227
Plan7ESTViterbi_add242	Plan7ESTViterbi_arrayidx253
Plan7ESTViterbi_add264	Plan7ESTViterbi_arrayidx275
Plan7ESTViterbi_add290	Plan7ESTViterbi_arrayidx301
Plan7ESTViterbi_add318	Plan7ESTViterbi_arrayidx329
Plan7ESTViterbi_add344	Plan7ESTViterbi_arrayidx355
Plan7ESTViterbi_add366	Plan7ESTViterbi_arrayidx377
Plan7ESTViterbi_add392	Plan7ESTViterbi_arrayidx403
Plan7ESTViterbi_add416	Plan7ESTViterbi_arrayidx420
Plan7ESTViterbi_add431	Plan7ESTViterbi_arrayidx442
Plan7ESTViterbi_add456	Plan7ESTViterbi_arrayidx460
Plan7ESTViterbi_add470	Plan7ESTViterbi_arrayidx481
Plan7ESTViterbi_add491	Plan7ESTViterbi_arrayidx490
Plan7ESTViterbi_add504	Plan7ESTViterbi_arrayidx515
Plan7ESTViterbi_add528	Plan7ESTViterbi_arrayidx539
Plan7ESTViterbi_add555	Plan7ESTViterbi_arrayidx566
Plan7ESTViterbi_add579	Plan7ESTViterbi_arrayidx590
Plan7ESTViterbi_add603	Plan7ESTViterbi_arrayidx606
Plan7ESTViterbi_298	Plan7ESTViterbi_arrayidx614
Plan7ESTViterbi_add626	Plan7ESTViterbi_arrayidx635
Plan7ESTViterbi_add647	Plan7ESTViterbi_arrayidx650
Plan7ESTViterbi_add657	Plan7ESTViterbi_arrayidx666
Plan7ESTViterbi_add674	Plan7ESTViterbi_arrayidx677
Plan7ESTViterbi_add684	Plan7ESTViterbi_arrayidx693
Plan7ESTViterbi_add702	Plan7ESTViterbi_arrayidx705
Plan7ESTViterbi_add712	Plan7ESTViterbi_arrayidx721
Plan7ESTViterbi_call	Plan7ESTViterbi_ret_mx
P7ViterbiAlignAlignment_9	P7ViterbiAlignAlignment_arrayidx
P7ViterbiAlignAlignment_call94	P7ViterbiAlignAlignment_arrayidx96
P7ViterbiAlignAlignment_49	P7ViterbiAlignAlignment_arrayidx112
P7ViterbiAlignAlignment_add212	P7ViterbiAlignAlignment_arrayidx223
P7ViterbiAlignAlignment_conv262	P7ViterbiAlignAlignment_arrayidx273
P7ViterbiAlignAlignment_add284	P7ViterbiAlignAlignment_arrayidx295
P7ViterbiAlignAlignment_add327	P7ViterbiAlignAlignment_arrayidx338
P7ViterbiAlignAlignment_conv384	P7ViterbiAlignAlignment_arrayidx381
P7ViterbiAlignAlignment_add422	P7ViterbiAlignAlignment_arrayidx433
P7ViterbiAlignAlignment_add465	P7ViterbiAlignAlignment_arrayidx476
P7ViterbiAlignAlignment_conv522	P7ViterbiAlignAlignment_arrayidx533
P7ViterbiAlignAlignment_conv571	P7ViterbiAlignAlignment_arrayidx582
P7ViterbiAlignAlignment_conv628	P7ViterbiAlignAlignment_arrayidx625
P7ViterbiAlignAlignment_conv666	P7ViterbiAlignAlignment_arrayidx672
P7ViterbiAlignAlignment_add707	P7ViterbiAlignAlignment_arrayidx716
P7ViterbiAlignAlignment_k.2	P7ViterbiAlignAlignment_arrayidx719
P7ViterbiAlignAlignment_add748	P7ViterbiAlignAlignment_arrayidx757
P7ViterbiAlignAlignment_conv792	P7ViterbiAlignAlignment_arrayidx798
P7ViterbiAlignAlignment_add821	P7ViterbiAlignAlignment_arrayidx830
ShadowTrace_k.0	ShadowTrace_arrayidx13
ShadowTrace_i.0	ShadowTrace_arrayidx17
ShadowTrace_k.0	ShadowTrace_arrayidx28
ShadowTrace_i.0	ShadowTrace_arrayidx32
ShadowTrace_k.0	ShadowTrace_arrayidx45
ShadowTrace_cond	ShadowTrace_arrayidx66
ShadowTrace_k.1	ShadowTrace_arrayidx90
ShadowTrace_cond132	ShadowTrace_arrayidx135
ShadowTrace_dk.0	ShadowTrace_arrayidx168
ShadowTrace_cond198	ShadowTrace_arrayidx201
ShadowTrace_add219	ShadowTrace_tlen
PostprocessSignificantHit_call9	PostprocessSignificantHit_arrayidx11
PostprocessSignificantHit_sub	PostprocessSignificantHit_arrayidx17
get_wee_midpt_add85	get_wee_midpt_arrayidx92
get_wee_midpt_add104	get_wee_midpt_arrayidx115
get_wee_midpt_add129	get_wee_midpt_arrayidx135
get_wee_midpt_add146	get_wee_midpt_arrayidx152
get_wee_midpt_add163	get_wee_midpt_arrayidx169
get_wee_midpt_add205	get_wee_midpt_arrayidx212
get_wee_midpt_add222	get_wee_midpt_arrayidx233
get_wee_midpt_add257	get_wee_midpt_arrayidx256
get_wee_midpt_add269	get_wee_midpt_arrayidx276
get_wee_midpt_add300	get_wee_midpt_arrayidx299
get_wee_midpt_add326	get_wee_midpt_arrayidx333
get_wee_midpt_add345	get_wee_midpt_arrayidx356
get_wee_midpt_add364	get_wee_midpt_arrayidx375
get_wee_midpt_add387	get_wee_midpt_arrayidx398
get_wee_midpt_add423	get_wee_midpt_arrayidx422
get_wee_midpt_add448	get_wee_midpt_arrayidx455
get_wee_midpt_add467	get_wee_midpt_arrayidx478
get_wee_midpt_add497	get_wee_midpt_arrayidx504
get_wee_midpt_add514	get_wee_midpt_arrayidx525
get_wee_midpt_add550	get_wee_midpt_arrayidx549
get_wee_midpt_add570	get_wee_midpt_arrayidx576
get_wee_midpt_add596	get_wee_midpt_arrayidx605
get_wee_midpt_add619	get_wee_midpt_arrayidx625
get_wee_midpt_add636	get_wee_midpt_arrayidx642
get_wee_midpt_add650	get_wee_midpt_arrayidx659
get_wee_midpt_320	get_wee_midpt_arrayidx742
get_wee_midpt_add756	get_wee_midpt_arrayidx759
get_wee_midpt_add770	get_wee_midpt_arrayidx774
get_wee_midpt_add790	get_wee_midpt_arrayidx789
get_wee_midpt_add813	get_wee_midpt_arrayidx819
get_wee_midpt_add835	get_wee_midpt_arrayidx844
get_wee_midpt_add858	get_wee_midpt_arrayidx864
get_wee_midpt_add875	get_wee_midpt_arrayidx881
get_wee_midpt_add889	get_wee_midpt_arrayidx898
get_wee_midpt_392	get_wee_midpt_arrayidx914
get_wee_midpt_add938	get_wee_midpt_arrayidx937
get_wee_midpt_add951	get_wee_midpt_arrayidx958
get_wee_midpt_add969	get_wee_midpt_arrayidx980
get_wee_midpt_add990	get_wee_midpt_arrayidx1001
get_wee_midpt_add1073	get_wee_midpt_arrayidx1084
get_wee_midpt_add1099	get_wee_midpt_arrayidx1106
get_wee_midpt_add1116	get_wee_midpt_arrayidx1127
get_wee_midpt_add1144	get_wee_midpt_arrayidx1143
get_wee_midpt_k2.4	get_wee_midpt_ret_k2
get_wee_midpt_t2.4	get_wee_midpt_ret_t2
get_wee_midpt_s2.1	get_wee_midpt_ret_s2
DisplayPlan7PostAlign_inc	DisplayPlan7PostAlign_arrayidx29
DisplayPlan7PostAlign_inc54	DisplayPlan7PostAlign_arrayidx53
EmitSequence_conv	EmitSequence_arrayidx
EmitSequence_4	EmitSequence_arrayidx4
EmitSequence_17	EmitSequence_arrayidx83
EmitSequence_conv162	EmitSequence_arrayidx164
EmitSequence_tpos.0	EmitSequence_tlen
EmitSequence_conv175	EmitSequence_arrayidx177
EmitSequence_dsq.0	EmitSequence_ret_dsq
EmitSequence_dec	EmitSequence_ret_L
EmitSequence_41	EmitSequence_ret_tr
EmitConsensusSequence_conv34	EmitConsensusSequence_arrayidx35
EmitConsensusSequence_23	EmitConsensusSequence_arrayidx54
EmitConsensusSequence_conv55	EmitConsensusSequence_arrayidx58
EmitConsensusSequence_conv71	EmitConsensusSequence_arrayidx73
EmitConsensusSequence_conv101	EmitConsensusSequence_arrayidx104
EmitConsensusSequence_conv114	EmitConsensusSequence_arrayidx117
EmitConsensusSequence_call33	EmitConsensusSequence_ret_seq
EmitConsensusSequence_call	EmitConsensusSequence_ret_dsq
EmitConsensusSequence_i.0	EmitConsensusSequence_ret_L
EmitConsensusSequence_47	EmitConsensusSequence_ret_tr
StateOccupancy_9	StateOccupancy_arrayidx
StateOccupancy_11	StateOccupancy_arrayidx11
StateOccupancy_mul15	StateOccupancy_arrayidx16
StateOccupancy_add43	StateOccupancy_arrayidx45
StateOccupancy_add64	StateOccupancy_arrayidx66
StateOccupancy_mul76	StateOccupancy_arrayidx78
StateOccupancy_div	StateOccupancy_arrayidx85
StateOccupancy_div93	StateOccupancy_arrayidx92
StateOccupancy_2	StateOccupancy_ret_mp
StateOccupancy_8	StateOccupancy_ret_dp
StateOccupancy_5	StateOccupancy_ret_ip
P7Viterbi_3	P7Viterbi_arrayidx6
P7Viterbi_add	P7Viterbi_arrayidx80
P7Viterbi_add87	P7Viterbi_arrayidx93
P7Viterbi_add100	P7Viterbi_arrayidx107
P7Viterbi_add111	P7Viterbi_arrayidx118
P7Viterbi_add124	P7Viterbi_arrayidx123
P7Viterbi_add139	P7Viterbi_arrayidx141
P7Viterbi_add148	P7Viterbi_arrayidx155
P7Viterbi_add172	P7Viterbi_arrayidx174
P7Viterbi_add179	P7Viterbi_arrayidx186
P7Viterbi_add192	P7Viterbi_arrayidx191
P7Viterbi_add215	P7Viterbi_arrayidx221
P7Viterbi_xme.0	P7Viterbi_arrayidx244
P7Viterbi_add255	P7Viterbi_arrayidx261
P7Viterbi_add269	P7Viterbi_arrayidx278
P7Viterbi_add289	P7Viterbi_arrayidx295
P7Viterbi_add303	P7Viterbi_arrayidx312
P7Viterbi_add324	P7Viterbi_arrayidx330
P7Viterbi_add338	P7Viterbi_arrayidx347
P7Viterbi_154	P7Viterbi_ret_tr
AllocHistogram_3	AllocHistogram_histogram
AddToHistogram_sub11	AddToHistogram_min10
AddToHistogram_11	AddToHistogram_histogram14
AddToHistogram_add31	AddToHistogram_max32
AddToHistogram_26	AddToHistogram_histogram41
AddToHistogram_inc59	AddToHistogram_arrayidx58
AddToHistogram_inc60	AddToHistogram_total
AddToHistogram_conv1	AddToHistogram_lowscore64
AddToHistogram_conv1	AddToHistogram_highscore69
EVDBasicFit_div	EVDBasicFit_arrayidx22
EVDBasicFit_conv24	EVDBasicFit_arrayidx28
EVDBasicFit_conv46	EVDBasicFit_arrayidx50
ExtremeValueSetHistogram_3	ExtremeValueSetHistogram_expect
ExtremeValueSetHistogram_conv27	ExtremeValueSetHistogram_arrayidx32
ExtremeValueSetHistogram_add75	ExtremeValueSetHistogram_chisq74
ExtremeValueSetHistogram_conv92	ExtremeValueSetHistogram_chip
ExtremeValueFitHistogram_conv36	ExtremeValueFitHistogram_arrayidx39
ExtremeValueFitHistogram_17	ExtremeValueFitHistogram_arrayidx47
EVDCensoredFit_lambda.2	EVDCensoredFit_ret_lambda
EVDCensoredFit_conv102	EVDCensoredFit_ret_mu
EVDMaxLikelyFit_lambda.2	EVDMaxLikelyFit_ret_lambda
EVDMaxLikelyFit_conv93	EVDMaxLikelyFit_ret_mu
GaussianFitHistogram_div	GaussianFitHistogram_arrayidx18
GaussianFitHistogram_conv29	GaussianFitHistogram_arrayidx31
GaussianFitHistogram_15	GaussianFitHistogram_expect
GaussianFitHistogram_conv87	GaussianFitHistogram_arrayidx92
GaussianFitHistogram_add138	GaussianFitHistogram_chisq137
GaussianFitHistogram_conv154	GaussianFitHistogram_chip
GaussianSetHistogram_3	GaussianSetHistogram_expect
GaussianSetHistogram_conv43	GaussianSetHistogram_arrayidx48
GaussianSetHistogram_add90	GaussianSetHistogram_chisq89
GaussianSetHistogram_conv105	GaussianSetHistogram_chip
build_cij_add249	build_cij_arrayidx248
build_cij_add254	build_cij_arrayidx253
annotate_model_conv15	annotate_model_arrayidx18
annotate_model_or	annotate_model_flags
annotate_model_conv54	annotate_model_arrayidx58
annotate_model_or67	annotate_model_flags66
annotate_model_conv99	annotate_model_arrayidx103
annotate_model_or112	annotate_model_flags111
annotate_model_apos.3	annotate_model_arrayidx126
annotate_model_or132	annotate_model_flags131
annotate_model_40	annotate_model_mpri
annotate_model_sub163	annotate_model_arrayidx166
annotate_model_add183	annotate_model_arrayidx186
annotate_model_add204	annotate_model_arrayidx207
annotate_model_60	annotate_model_ipri
annotate_model_sub255	annotate_model_arrayidx258
annotate_model_add276	annotate_model_arrayidx279
annotate_model_add297	annotate_model_arrayidx300
annotate_model_80	annotate_model_tpri
annotate_model_sub348	annotate_model_arrayidx351
annotate_model_add369	annotate_model_arrayidx372
annotate_model_add390	annotate_model_arrayidx393
fake_tracebacks_inc94	fake_tracebacks_arrayidx104
fake_tracebacks_i.0	fake_tracebacks_arrayidx109
fake_tracebacks_inc118	fake_tracebacks_arrayidx137
fake_tracebacks_i.0	fake_tracebacks_arrayidx206
fake_tracebacks_i.0	fake_tracebacks_arrayidx270
fake_tracebacks_k.0	fake_tracebacks_arrayidx323
fake_tracebacks_i.0	fake_tracebacks_arrayidx328
fake_tracebacks_inc400	fake_tracebacks_tlen
fake_tracebacks_1	fake_tracebacks_ret_tr
trace_doctor_7	trace_doctor_arrayidx16
trace_doctor_10	trace_doctor_arrayidx22
trace_doctor_18	trace_doctor_arrayidx49
trace_doctor_21	trace_doctor_arrayidx55
trace_doctor_29	trace_doctor_arrayidx82
trace_doctor_32	trace_doctor_arrayidx88
trace_doctor_add113	trace_doctor_arrayidx116
trace_doctor_43	trace_doctor_arrayidx122
trace_doctor_56	trace_doctor_arrayidx168
trace_doctor_72	trace_doctor_arrayidx227
trace_doctor_81	trace_doctor_arrayidx260
trace_doctor_84	trace_doctor_arrayidx266
trace_doctor_87	trace_doctor_arrayidx272
trace_doctor_npos.0	trace_doctor_tlen280
trace_doctor_ndi.0	trace_doctor_ret_ndi
trace_doctor_nid.0	trace_doctor_ret_nid
AllocPlan7Body_call	AllocPlan7Body_rf
AllocPlan7Body_call5	AllocPlan7Body_cs
AllocPlan7Body_call9	AllocPlan7Body_ca
AllocPlan7Body_4	AllocPlan7Body_map
AllocPlan7Body_6	AllocPlan7Body_t
AllocPlan7Body_8	AllocPlan7Body_mat
AllocPlan7Body_10	AllocPlan7Body_ins
AllocPlan7Body_12	AllocPlan7Body_arrayidx
AllocPlan7Body_15	AllocPlan7Body_arrayidx35
AllocPlan7Body_18	AllocPlan7Body_arrayidx41
AllocPlan7Body_21	AllocPlan7Body_tsc
AllocPlan7Body_23	AllocPlan7Body_msc
AllocPlan7Body_25	AllocPlan7Body_isc
AllocPlan7Body_27	AllocPlan7Body_tsc_mem
AllocPlan7Body_29	AllocPlan7Body_msc_mem
AllocPlan7Body_31	AllocPlan7Body_isc_mem
AllocPlan7Body_32	AllocPlan7Body_arrayidx60
AllocPlan7Body_34	AllocPlan7Body_arrayidx63
AllocPlan7Body_36	AllocPlan7Body_arrayidx66
AllocPlan7Body_add.ptr	AllocPlan7Body_arrayidx72
AllocPlan7Body_add.ptr79	AllocPlan7Body_arrayidx82
AllocPlan7Body_add.ptr87	AllocPlan7Body_arrayidx90
AllocPlan7Body_add.ptr100	AllocPlan7Body_arrayidx103
AllocPlan7Body_add.ptr108	AllocPlan7Body_arrayidx111
AllocPlan7Body_add.ptr123	AllocPlan7Body_arrayidx126
AllocPlan7Body_59	AllocPlan7Body_begin
AllocPlan7Body_61	AllocPlan7Body_end
AllocPlan7Body_63	AllocPlan7Body_bsc_mem
AllocPlan7Body_65	AllocPlan7Body_esc_mem
AllocPlan7Body_66	AllocPlan7Body_bsc
AllocPlan7Body_67	AllocPlan7Body_esc
Lawless416_conv48	Lawless416_ret_f
Lawless416_conv58	Lawless416_ret_df
Lawless422_conv78	Lawless422_ret_f
Lawless422_conv88	Lawless422_ret_df
HMMFileOpen_call2	HMMFileOpen_f3
HMMFileOpen_call7	HMMFileOpen_mode
HMMFileOpen_call10	HMMFileOpen_f11
HMMFileOpen_call22	HMMFileOpen_mode23
read_bin20hmm	HMMFileOpen_parser45
read_bin20hmm	HMMFileOpen_parser50
read_bin19hmm	HMMFileOpen_parser56
read_bin19hmm	HMMFileOpen_parser61
read_bin17hmm	HMMFileOpen_parser67
read_bin17hmm	HMMFileOpen_parser72
read_bin11hmm	HMMFileOpen_parser78
read_bin11hmm	HMMFileOpen_parser83
read_bin10hmm	HMMFileOpen_parser89
read_bin10hmm	HMMFileOpen_parser94
read_asc20hmm	HMMFileOpen_parser120
read_asc19hmm	HMMFileOpen_parser126
read_asc17hmm	HMMFileOpen_parser132
read_asc11hmm	HMMFileOpen_parser138
read_asc10hmm	HMMFileOpen_parser144
P7FillOptimalAccuracy_97	P7FillOptimalAccuracy_arrayidx286
P7FillOptimalAccuracy_100	P7FillOptimalAccuracy_arrayidx298
P7FillOptimalAccuracy_call311	P7FillOptimalAccuracy_arrayidx316
P7FillOptimalAccuracy_112	P7FillOptimalAccuracy_arrayidx328
P7FillOptimalAccuracy_118	P7FillOptimalAccuracy_ret_tr
P7OptimalAccuracyTrace_k.0	P7OptimalAccuracyTrace_arrayidx50
P7OptimalAccuracyTrace_i.0	P7OptimalAccuracyTrace_arrayidx54
P7OptimalAccuracyTrace_k.0	P7OptimalAccuracyTrace_arrayidx81
P7OptimalAccuracyTrace_i.0	P7OptimalAccuracyTrace_arrayidx85
P7OptimalAccuracyTrace_k.0	P7OptimalAccuracyTrace_arrayidx114
read_bin20hmm_or	read_bin20hmm_flags428
read_bin20hmm_and430	read_bin20hmm_flags429
read_bin20hmm_call11	read_bin20hmm_ret_hmm
read_bin19hmm_call10	read_bin19hmm_comlog
read_bin19hmm_8	read_bin19hmm_ret_hmm
read_bin17hmm_call10	read_bin17hmm_comlog
read_bin17hmm_8	read_bin17hmm_ret_hmm
read_bin11hmm_call10	read_bin11hmm_comlog
read_bin11hmm_8	read_bin11hmm_ret_hmm
read_bin10hmm_call10	read_bin10hmm_comlog
read_bin10hmm_8	read_bin10hmm_ret_hmm
read_asc20hmm_call46	read_asc20hmm_nseq
read_asc20hmm_or	read_asc20hmm_flags
read_asc20hmm_or103	read_asc20hmm_flags102
read_asc20hmm_or119	read_asc20hmm_flags118
read_asc20hmm_call134	read_asc20hmm_comlog135
read_asc20hmm_call144	read_asc20hmm_comlog145
read_asc20hmm_call163	read_asc20hmm_ctime
read_asc20hmm_conv178	read_asc20hmm_ga1
read_asc20hmm_conv185	read_asc20hmm_ga2
read_asc20hmm_or187	read_asc20hmm_flags186
read_asc20hmm_conv202	read_asc20hmm_tc1
read_asc20hmm_conv209	read_asc20hmm_tc2
read_asc20hmm_or211	read_asc20hmm_flags210
read_asc20hmm_conv226	read_asc20hmm_nc1
read_asc20hmm_conv233	read_asc20hmm_nc2
read_asc20hmm_or235	read_asc20hmm_flags234
read_asc20hmm_call259	read_asc20hmm_arrayidx261
read_asc20hmm_call279	read_asc20hmm_p1
read_asc20hmm_div	read_asc20hmm_p1289
read_asc20hmm_call315	read_asc20hmm_arrayidx317
read_asc20hmm_or329	read_asc20hmm_flags328
read_asc20hmm_conv338	read_asc20hmm_mu
read_asc20hmm_conv345	read_asc20hmm_lambda
read_asc20hmm_call354	read_asc20hmm_checksum
read_asc20hmm_call429	read_asc20hmm_tbd1
read_asc20hmm_div433	read_asc20hmm_tbd1434
read_asc20hmm_call470	read_asc20hmm_arrayidx474
read_asc20hmm_call486	read_asc20hmm_arrayidx488
read_asc20hmm_91	read_asc20hmm_arrayidx508
read_asc20hmm_call526	read_asc20hmm_arrayidx530
read_asc20hmm_102	read_asc20hmm_arrayidx553
read_asc20hmm_call568	read_asc20hmm_arrayidx572
read_asc20hmm_call582	read_asc20hmm_arrayidx584
read_asc20hmm_call590	read_asc20hmm_arrayidx592
read_asc20hmm_or611	read_asc20hmm_flags610
read_asc20hmm_and613	read_asc20hmm_flags612
read_asc20hmm_call8	read_asc20hmm_ret_hmm
read_asc19hmm_or	read_asc19hmm_flags
read_asc19hmm_or72	read_asc19hmm_flags71
read_asc19hmm_call91	read_asc19hmm_arrayidx
read_asc19hmm_conv94	read_asc19hmm_p1
read_asc19hmm_call134	read_asc19hmm_arrayidx135
read_asc19hmm_call141	read_asc19hmm_tbd1
read_asc19hmm_div	read_asc19hmm_arrayidx148
read_asc19hmm_div154	read_asc19hmm_tbd1155
read_asc19hmm_call200	read_asc19hmm_arrayidx204
read_asc19hmm_call217	read_asc19hmm_arrayidx220
read_asc19hmm_conv237	read_asc19hmm_arrayidx241
read_asc19hmm_call252	read_asc19hmm_arrayidx256
read_asc19hmm_call267	read_asc19hmm_arrayidx271
read_asc19hmm_conv291	read_asc19hmm_arrayidx295
read_asc19hmm_call311	read_asc19hmm_arrayidx315
read_asc19hmm_call331	read_asc19hmm_arrayidx335
read_asc19hmm_61	read_asc19hmm_arrayidx346
read_asc19hmm_64	read_asc19hmm_arrayidx358
read_asc19hmm_call391	read_asc19hmm_arrayidx395
read_asc19hmm_or404	read_asc19hmm_flags403
read_asc19hmm_and406	read_asc19hmm_flags405
read_asc19hmm_call407	read_asc19hmm_comlog
read_asc19hmm_call7	read_asc19hmm_ret_hmm
read_asc17hmm_call8	read_asc17hmm_comlog
read_asc17hmm_7	read_asc17hmm_ret_hmm
write_bin_string_conv	write_bin_string_len
read_plan9_binhmm_call36	read_plan9_binhmm_name37
byteswap_1	byteswap_arrayidx7
byteswap_0	byteswap_arrayidx9
read_plan9_aschmm_or	read_plan9_aschmm_flags
read_plan9_aschmm_or130	read_plan9_aschmm_flags129
read_plan9_aschmm_35	read_plan9_aschmm_arrayidx187
read_plan9_aschmm_40	read_plan9_aschmm_arrayidx207
read_plan9_aschmm_conv222	read_plan9_aschmm_arrayidx225
read_plan9_aschmm_conv239	read_plan9_aschmm_arrayidx244
read_plan9_aschmm_conv258	read_plan9_aschmm_arrayidx263
read_plan9_aschmm_conv281	read_plan9_aschmm_arrayidx286
read_plan9_aschmm_conv326	read_plan9_aschmm_arrayidx330
read_plan9_aschmm_conv344	read_plan9_aschmm_arrayidx349
read_plan9_aschmm_conv363	read_plan9_aschmm_arrayidx368
read_plan9_aschmm_conv386	read_plan9_aschmm_arrayidx392
read_plan9_aschmm_conv432	read_plan9_aschmm_arrayidx436
read_plan9_aschmm_conv450	read_plan9_aschmm_arrayidx455
read_plan9_aschmm_conv469	read_plan9_aschmm_arrayidx474
read_bin_string_call4	read_bin_string_ret_s
hmmcalibrate_inc	hmmcalibrate_optind
hmmcalibrate_71	hmmcalibrate_arrayidx153
hmmcalibrate_73	hmmcalibrate_arrayidx157
hmmcalibrate_104	hmmcalibrate_mu212
hmmcalibrate_106	hmmcalibrate_lambda215
hmmcalibrate_or	hmmcalibrate_flags
main_loop_serial_call	main_loop_serial_ret_hist
main_loop_serial_max.0	main_loop_serial_ret_max
main_call10	main_globE11
main_conv	main_globT17
main_call23	main_Z24
main_call59	main_domE60
main_conv67	main_domT68
main_inc	main_optind
main_inc127	main_optind
regc_incdec.ptr	regc_regcode1
regc_b	regc_1
regc_inc	regc_regsize
reg_inc	reg_regnpar3
reg_and13	reg_flagp
reg_or	reg_flagp
reg_incdec.ptr	reg_regparse17
reg_and26	reg_flagp
reg_or28	reg_flagp
reg_incdec.ptr37	reg_regparse36
main_130	main_Z296
main_loop_serial313_nseq.0	main_loop_serial313_ret_nseq
LogNorm_conv41	LogNorm_arrayidx43
SampleDirichlet_call	SampleDirichlet_arrayidx2
SampleCountvector_conv1	SampleCountvector_arrayidx
init_ilogsum_conv4	init_ilogsum_arrayidx
XNU_conv112	XNU_arrayidx114
TraceScoreCorrection_call	TraceScoreCorrection_arrayidx35
TraceScoreCorrection_call46	TraceScoreCorrection_arrayidx48
Getword_call	Getword.sptr
Getword_call2	Getword.sptr
Getword_call6	Getword.sptr
Getword_call10	Getword.sptr
SetAutocuts_2	SetAutocuts_globT
SetAutocuts_3	SetAutocuts_domT
SetAutocuts_6	SetAutocuts_globT10
SetAutocuts_7	SetAutocuts_domT11
SetAutocuts_10	SetAutocuts_globT23
SetAutocuts_11	SetAutocuts_domT24
P7Handmodelmaker_or	P7Handmodelmaker_arrayidx42
P7Handmodelmaker_or46	P7Handmodelmaker_arrayidx45
P7Fastmodelmaker_or	P7Fastmodelmaker_arrayidx60
P7Fastmodelmaker_or64	P7Fastmodelmaker_arrayidx60
P7Maxmodelmaker_18	P7Maxmodelmaker_arrayidx
P7Maxmodelmaker_conv133	P7Maxmodelmaker_arrayidx135
P7Maxmodelmaker_conv356	P7Maxmodelmaker_arrayidx358
P7Maxmodelmaker_conv410	P7Maxmodelmaker_arrayidx411
P7Maxmodelmaker_conv425	P7Maxmodelmaker_arrayidx426
P7Maxmodelmaker_conv438	P7Maxmodelmaker_arrayidx439
P7Maxmodelmaker_conv453	P7Maxmodelmaker_arrayidx454
P7Maxmodelmaker_conv468	P7Maxmodelmaker_arrayidx469
P7Maxmodelmaker_conv483	P7Maxmodelmaker_arrayidx484
P7Maxmodelmaker_conv496	P7Maxmodelmaker_arrayidx497
P7Maxmodelmaker_add507	P7Maxmodelmaker_arrayidx514
P7Maxmodelmaker_j.0	P7Maxmodelmaker_arrayidx516
P7Maxmodelmaker_inc579	P7Maxmodelmaker_arrayidx578
P7Maxmodelmaker_add595	P7Maxmodelmaker_arrayidx594
P7Maxmodelmaker_and	P7Maxmodelmaker_arrayidx689
P7Maxmodelmaker_or	P7Maxmodelmaker_arrayidx691
matassign2hmm_or	matassign2hmm_arrayidx14
matassign2hmm_or23	matassign2hmm_arrayidx22
matassign2hmm_or36	matassign2hmm_arrayidx35
matassign2hmm_or43	matassign2hmm_arrayidx42
matassign2hmm_call64	matassign2hmm_rf65
matassign2hmm_conv76	matassign2hmm_arrayidx79
matassign2hmm_30	matassign2hmm_ret_tr
matassign2hmm_call	matassign2hmm_ret_hmm
build_cij_add	build_cij_arrayidx84
build_cij_add91	build_cij_arrayidx90
build_cij_add95	build_cij_arrayidx94
build_cij_add188	build_cij_arrayidx187
build_cij_add193	build_cij_arrayidx192
P7OptimalAccuracyTrace_k.0	P7OptimalAccuracyTrace_arrayidx171
P7OptimalAccuracyTrace_i.0	P7OptimalAccuracyTrace_arrayidx175
P7OptimalAccuracyTrace_k.0	P7OptimalAccuracyTrace_arrayidx198
P7OptimalAccuracyTrace_k.0	P7OptimalAccuracyTrace_arrayidx237
P7OptimalAccuracyTrace_i.0	P7OptimalAccuracyTrace_arrayidx241
P7OptimalAccuracyTrace_k.0	P7OptimalAccuracyTrace_arrayidx268
P7OptimalAccuracyTrace_i.0	P7OptimalAccuracyTrace_arrayidx272
P7OptimalAccuracyTrace_i.0	P7OptimalAccuracyTrace_arrayidx331
P7OptimalAccuracyTrace_k.1	P7OptimalAccuracyTrace_arrayidx398
P7OptimalAccuracyTrace_i.0	P7OptimalAccuracyTrace_arrayidx402
P7OptimalAccuracyTrace_i.0	P7OptimalAccuracyTrace_arrayidx441
P7OptimalAccuracyTrace_i.0	P7OptimalAccuracyTrace_arrayidx496
P7OptimalAccuracyTrace_tpos.0	P7OptimalAccuracyTrace_tlen
P7OptimalAccuracyTrace_227	P7OptimalAccuracyTrace_ret_tr
PostalCode_call13	PostalCode_arrayidx15
PostalCode_call21	PostalCode_arrayidx24
PostalCode_call29	PostalCode_arrayidx32
PostalCode_call38	PostalCode_arrayidx41
PostalCode_call47	PostalCode_arrayidx50
P7ReadPrior_call25	P7ReadPrior_tnum
P7ReadPrior_conv	P7ReadPrior_arrayidx
P7ReadPrior_conv45	P7ReadPrior_arrayidx49
P7ReadPrior_call54	P7ReadPrior_mnum
P7ReadPrior_conv74	P7ReadPrior_arrayidx76
P7ReadPrior_conv83	P7ReadPrior_arrayidx87
P7ReadPrior_call95	P7ReadPrior_inum
P7ReadPrior_conv115	P7ReadPrior_arrayidx117
P7ReadPrior_conv124	P7ReadPrior_arrayidx128
PAMPrior_conv40	PAMPrior_arrayidx44
PAMPrior_conv53	PAMPrior_arrayidx55
P7DefaultNullModel_2	P7DefaultNullModel_arrayidx3
P7DefaultNullModel_conv8	P7DefaultNullModel_arrayidx10
P7ReadNullModel_conv	P7ReadNullModel_arrayidx
P7ReadNullModel_conv33	P7ReadNullModel_ret_p1
P7PriorifyHMM_conv11	P7PriorifyHMM_tbd112
P7PriorifyHMM_conv19	P7PriorifyHMM_arrayidx21
P7PriorifyTransitionVector_conv11	P7PriorifyTransitionVector_arrayidx13
P7PriorifyTransitionVector_add	P7PriorifyTransitionVector_arrayidx19
P7PriorifyTransitionVector_add28	P7PriorifyTransitionVector_arrayidx27
P7PriorifyTransitionVector_add38	P7PriorifyTransitionVector_arrayidx37
P7PriorifyTransitionVector_xi.0	P7PriorifyTransitionVector_arrayidx126
P7PriorifyEmissionVector_conv9	P7PriorifyEmissionVector_arrayidx11
P7PriorifyEmissionVector_add	P7PriorifyEmissionVector_arrayidx16
P7PriorifyEmissionVector_7	P7PriorifyEmissionVector_arrayidx32
P7PriorifyEmissionVector_xi.0	P7PriorifyEmissionVector_arrayidx66
P7PriorifyEmissionVector_16	P7PriorifyEmissionVector_arrayidx80
default_amino_prior_1	default_amino_prior_arrayidx24
default_amino_prior_2	default_amino_prior_arrayidx35
ZeroPlan7_and	ZeroPlan7_flags
ZeroPlan7_and21	ZeroPlan7_flags20
Plan7SetName_call	Plan7SetName_name3
Plan7SetAccession_call	Plan7SetAccession_acc3
Plan7SetAccession_or	Plan7SetAccession_flags
Plan7SetDescription_call	Plan7SetDescription_desc3
Plan7SetDescription_or	Plan7SetDescription_flags
Plan7ComlogAppend_call12	Plan7ComlogAppend_comlog13
Plan7ComlogAppend_call17	Plan7ComlogAppend_comlog18
Plan7SetCtime_call	Plan7SetCtime_date
Plan7SetCtime_call3	Plan7SetCtime_ctime4
Plan7SetNullModel_1	Plan7SetNullModel_arrayidx3
P7Logoddsify_call	P7Logoddsify_arrayidx11
P7Logoddsify_call22	P7Logoddsify_arrayidx26
P7Logoddsify_call35	P7Logoddsify_arrayidx40
P7Logoddsify_call49	P7Logoddsify_arrayidx54
P7Logoddsify_call69	P7Logoddsify_arrayidx72
P7Logoddsify_call78	P7Logoddsify_arrayidx82
P7Logoddsify_call87	P7Logoddsify_arrayidx91
P7Logoddsify_call97	P7Logoddsify_arrayidx101
P7Logoddsify_call107	P7Logoddsify_arrayidx111
P7Logoddsify_call117	P7Logoddsify_arrayidx121
P7Logoddsify_call126	P7Logoddsify_arrayidx130
P7Logoddsify_conv249	P7Logoddsify_arrayidx251
P7Logoddsify_cond368	P7Logoddsify_arrayidx371
P7Logoddsify_call377	P7Logoddsify_arrayidx379
P7Logoddsify_call383	P7Logoddsify_arrayidx386
P7Logoddsify_call390	P7Logoddsify_arrayidx393
P7Logoddsify_call397	P7Logoddsify_arrayidx400
P7Logoddsify_call405	P7Logoddsify_arrayidx408
P7Logoddsify_call416	P7Logoddsify_arrayidx419
P7Logoddsify_call424	P7Logoddsify_arrayidx427
P7Logoddsify_call431	P7Logoddsify_arrayidx434
P7Logoddsify_or	P7Logoddsify_flags435
Plan7Renormalize_div16	Plan7Renormalize_tbd115
Plan7Renormalize_div37	Plan7Renormalize_arrayidx36
Plan7Renormalize_and	Plan7Renormalize_flags
Plan7Renormalize_or	Plan7Renormalize_flags65
Plan7NakedConfig_conv24	Plan7NakedConfig_arrayidx26
Plan7NakedConfig_and	Plan7NakedConfig_flags
Plan7GlobalConfig_conv1	Plan7GlobalConfig_arrayidx2
Plan7GlobalConfig_1	Plan7GlobalConfig_arrayidx6
Plan7GlobalConfig_conv16	Plan7GlobalConfig_arrayidx19
Plan7GlobalConfig_3	Plan7GlobalConfig_arrayidx23
Plan7GlobalConfig_conv33	Plan7GlobalConfig_arrayidx35
Plan7GlobalConfig_and	Plan7GlobalConfig_flags
Plan7LSConfig_conv1	Plan7LSConfig_arrayidx2
Plan7LSConfig_1	Plan7LSConfig_arrayidx6
Plan7LSConfig_conv16	Plan7LSConfig_arrayidx19
Plan7LSConfig_3	Plan7LSConfig_arrayidx23
Plan7LSConfig_conv27	Plan7LSConfig_arrayidx30
Plan7LSConfig_5	Plan7LSConfig_arrayidx34
Plan7LSConfig_conv38	Plan7LSConfig_arrayidx40
Plan7LSConfig_and	Plan7LSConfig_flags
Plan7SWConfig_sub	Plan7SWConfig_arrayidx1
Plan7SWConfig_1	Plan7SWConfig_arrayidx5
Plan7SWConfig_sub13	Plan7SWConfig_arrayidx16
Plan7SWConfig_3	Plan7SWConfig_arrayidx20
Plan7SWConfig_conv30	Plan7SWConfig_arrayidx31
Plan7SWConfig_conv59	Plan7SWConfig_arrayidx62
Plan7SWConfig_and	Plan7SWConfig_flags
Plan7FSConfig_sub	Plan7FSConfig_arrayidx1
Plan7FSConfig_1	Plan7FSConfig_arrayidx5
Plan7FSConfig_sub13	Plan7FSConfig_arrayidx16
Plan7FSConfig_3	Plan7FSConfig_arrayidx20
Plan7FSConfig_conv23	Plan7FSConfig_arrayidx26
Plan7FSConfig_5	Plan7FSConfig_arrayidx30
Plan7FSConfig_conv35	Plan7FSConfig_arrayidx36
Plan7FSConfig_conv64	Plan7FSConfig_arrayidx67
Plan7FSConfig_and	Plan7FSConfig_flags
Plan7ESTConfig_call	Plan7ESTConfig_arrayidx70
Plan7ESTConfig_call93	Plan7ESTConfig_arrayidx97
Plan7ESTConfig_call102	Plan7ESTConfig_dna2103
Plan7ESTConfig_call104	Plan7ESTConfig_dna4105
Plan9toPlan7_3	Plan9toPlan7_arrayidx6
Plan9toPlan7_7	Plan9toPlan7_arrayidx15
Plan9toPlan7_11	Plan9toPlan7_arrayidx24
Plan9toPlan7_15	Plan9toPlan7_arrayidx32
Plan9toPlan7_19	Plan9toPlan7_arrayidx41
Plan9toPlan7_23	Plan9toPlan7_arrayidx49
Plan9toPlan7_27	Plan9toPlan7_arrayidx58
Plan9toPlan7_33	Plan9toPlan7_arrayidx75
Plan9toPlan7_39	Plan9toPlan7_arrayidx99
Plan9toPlan7_div	Plan9toPlan7_tbd1
Plan9toPlan7_49	Plan9toPlan7_arrayidx126
Plan9toPlan7_or	Plan9toPlan7_flags134
Plan9toPlan7_or143	Plan9toPlan7_flags142
Plan9toPlan7_or146	Plan9toPlan7_flags145
Plan9toPlan7_and148	Plan9toPlan7_flags147
Plan9toPlan7_call	Plan9toPlan7_ret_plan7
P9AllocHMM_3	P9AllocHMM_ins
P9AllocHMM_5	P9AllocHMM_del
P9AllocHMM_7	P9AllocHMM_mat
P9AllocHMM_call13	P9AllocHMM_ref
P9AllocHMM_call17	P9AllocHMM_cs
P9AllocHMM_11	P9AllocHMM_xray
P9AllocHMM_call24	P9AllocHMM_name
P9DefaultNullModel_2	P9DefaultNullModel_arrayidx3
P7Backward_1	P7Backward_arrayidx3
P7Backward_add10	P7Backward_arrayidx13
P7Backward_add29	P7Backward_arrayidx33
P7Backward_add44	P7Backward_arrayidx43
P7Backward_add75	P7Backward_arrayidx78
P7Backward_call96	P7Backward_arrayidx99
P7Backward_call118	P7Backward_arrayidx121
P7Backward_call140	P7Backward_arrayidx143
P7Backward_call158	P7Backward_arrayidx161
P7Backward_call177	P7Backward_arrayidx180
P7Backward_add200	P7Backward_arrayidx205
P7Backward_call257	P7Backward_arrayidx261
P7Backward_add274	P7Backward_arrayidx273
P7Backward_call296	P7Backward_arrayidx300
P7Backward_add312	P7Backward_arrayidx311
P7Backward_call334	P7Backward_arrayidx338
P7Backward_call	P7Backward_ret_mx
P7EmitterPosterior_sub12	P7EmitterPosterior_arrayidx16
P7EmitterPosterior_sub31	P7EmitterPosterior_arrayidx35
P7EmitterPosterior_sub50	P7EmitterPosterior_arrayidx54
P7EmitterPosterior_37	P7EmitterPosterior_arrayidx74
P7EmitterPosterior_add126	P7EmitterPosterior_arrayidx125
P7EmitterPosterior_sub132	P7EmitterPosterior_arrayidx131
P7EmitterPosterior_71	P7EmitterPosterior_arrayidx142
P7EmitterPosterior_add171	P7EmitterPosterior_arrayidx170
P7EmitterPosterior_sub177	P7EmitterPosterior_arrayidx176
P7EmitterPosterior_97	P7EmitterPosterior_arrayidx194
P7EmitterPosterior_add259	P7EmitterPosterior_arrayidx258
P7EmitterPosterior_sub266	P7EmitterPosterior_arrayidx265
P7FillOptimalAccuracy_17	P7FillOptimalAccuracy_arrayidx54
P7FillOptimalAccuracy_22	P7FillOptimalAccuracy_arrayidx70
P7FillOptimalAccuracy_27	P7FillOptimalAccuracy_arrayidx87
P7FillOptimalAccuracy_32	P7FillOptimalAccuracy_arrayidx102
P7FillOptimalAccuracy_call	P7FillOptimalAccuracy_arrayidx116
P7FillOptimalAccuracy_44	P7FillOptimalAccuracy_arrayidx135
P7FillOptimalAccuracy_49	P7FillOptimalAccuracy_arrayidx151
P7FillOptimalAccuracy_55	P7FillOptimalAccuracy_arrayidx171
P7FillOptimalAccuracy_60	P7FillOptimalAccuracy_arrayidx187
P7FillOptimalAccuracy_call198	P7FillOptimalAccuracy_arrayidx202
P7FillOptimalAccuracy_call217	P7FillOptimalAccuracy_arrayidx222
P7FillOptimalAccuracy_79	P7FillOptimalAccuracy_arrayidx241
P7FillOptimalAccuracy_call257	P7FillOptimalAccuracy_arrayidx262
P7FillOptimalAccuracy_91	P7FillOptimalAccuracy_arrayidx274
MSAToSqinfo_or	MSAToSqinfo_flags34
MSAToSqinfo_or58	MSAToSqinfo_flags57
MSAToSqinfo_call63	MSAToSqinfo_len
MSAToSqinfo_or69	MSAToSqinfo_flags68
seqfile_open_3	seqfile_open_f
seqfile_open_call3	seqfile_open_fname
seqfile_open_call4	seqfile_open_f5
seqfile_open_call7	seqfile_open_f8
seqfile_open_call13	seqfile_open_fname14
seqfile_open_format.addr.0	seqfile_open_format30
seqfile_open_13	seqfile_open_afp34
seqfile_open_14	seqfile_open_f37
seqfile_open_16	seqfile_open_do_stdin40
seqfile_open_18	seqfile_open_do_gzip43
seqfile_open_20	seqfile_open_fname46
seqfile_open_22	seqfile_open_format49
seqfile_open_24	seqfile_open_linenumber52
seqfile_open_call58	seqfile_open_msa59
SeqfileGetLine_inc	SeqfileGetLine_linenumber
readGenBank_35	readGenBank_stop
readGenBank_37	readGenBank_olen
readGenBank_or	readGenBank_flags
qst_20	qst_i.2
qst_19	qst_jj.1
ReadA2M_call2	ReadA2M_buf
ReadA2M_incdec.ptr	ReadA2M_buf
ReadA2M_call17	ReadA2M_arrayidx
ReadA2M_inc	ReadA2M_nseq
ReadA2M_call34	ReadA2M_arrayidx37
MajorityRuleConsensus_inc27	MajorityRuleConsensus_arrayidx26
MajorityRuleConsensus_inc29	MajorityRuleConsensus_arrayidx28
MajorityRuleConsensus_conv56	MajorityRuleConsensus_arrayidx59
make_alilist_cond	make_alilist_arrayidx61
make_alilist_r1.0	make_alilist_ret_listlen
make_alilist_1	make_alilist_ret_s1_list
compare_lists_div	compare_lists_ret_sc
make_ref_alilist_cond	make_ref_alilist_arrayidx37
make_ref_alilist_cond108	make_ref_alilist_arrayidx110
make_ref_alilist_lpos.0	make_ref_alilist_ret_listlen
make_ref_alilist_1	make_ref_alilist_ret_s1_list
AllocAlignment_call4	AllocAlignment_arrayidx
AllocAlignment_4	AllocAlignment_wgt
AllocAlignment_7	AllocAlignment_sqinfo
AllocAlignment_1	AllocAlignment_ret_aseq
SAMizeAlignment_.	SAMizeAlignment_arrayidx113
SAMizeAlignmentByGapFrac_conv98	SAMizeAlignmentByGapFrac_arrayidx102
SAMizeAlignmentByGapFrac_conv163	SAMizeAlignmentByGapFrac_arrayidx167
AllocTophits_3	AllocTophits_unsrt
GrowTophits_5	GrowTophits_unsrt1
GrowTophits_add4	GrowTophits_alloc3
RegisterHit_call	RegisterHit_name2
RegisterHit_call3	RegisterHit_acc8
RegisterHit_call9	RegisterHit_desc14
RegisterHit_inc	RegisterHit_num84
GetRankedHit_2	GetRankedHit_r_pvalue
GetRankedHit_5	GetRankedHit_r_score
GetRankedHit_8	GetRankedHit_r_motherp
GetRankedHit_11	GetRankedHit_r_mothersc
GetRankedHit_14	GetRankedHit_r_name
GetRankedHit_17	GetRankedHit_r_acc
GetRankedHit_20	GetRankedHit_r_desc
GetRankedHit_23	GetRankedHit_r_sqfrom
GetRankedHit_26	GetRankedHit_r_sqto
GetRankedHit_29	GetRankedHit_r_sqlen
GetRankedHit_32	GetRankedHit_r_hmmfrom
GetRankedHit_35	GetRankedHit_r_hmmto
GetRankedHit_38	GetRankedHit_r_hmmlen
GetRankedHit_41	GetRankedHit_r_domidx
GetRankedHit_44	GetRankedHit_r_ndom
GetRankedHit_47	GetRankedHit_r_ali
FullSortTophits_3	FullSortTophits_hit
FullSortTophits_arrayidx	FullSortTophits_arrayidx7
P7AllocTrace_call1	P7AllocTrace_statetype
P7AllocTrace_4	P7AllocTrace_nodeidx
P7AllocTrace_6	P7AllocTrace_pos
P7AllocTrace_1	P7AllocTrace_ret_tr
P7ReallocTrace_call	P7ReallocTrace_statetype1
P7ReallocTrace_5	P7ReallocTrace_nodeidx5
P7ReallocTrace_9	P7ReallocTrace_pos9
MergeTraceArrays_2	MergeTraceArrays_arrayidx3
MergeTraceArrays_3	MergeTraceArrays_arrayidx12
P7ReverseTrace_11	P7ReverseTrace_arrayidx14
P7ReverseTrace_13	P7ReverseTrace_arrayidx19
P7ReverseTrace_15	P7ReverseTrace_arrayidx24
P7ReverseTrace_call	P7ReverseTrace_statetype28
P7ReverseTrace_4	P7ReverseTrace_nodeidx29
P7ReverseTrace_7	P7ReverseTrace_pos30
P7TraceCount_add38	P7TraceCount_arrayidx37
P7TraceCount_add43	P7TraceCount_arrayidx42
P7TraceCount_add65	P7TraceCount_arrayidx64
P7TraceCount_add67	P7TraceCount_tbd1
P7TraceCount_add92	P7TraceCount_arrayidx91
P7TraceCount_add101	P7TraceCount_arrayidx100
P7TraceCount_add110	P7TraceCount_arrayidx109
P7TraceCount_add117	P7TraceCount_arrayidx116
P7TraceCount_add143	P7TraceCount_arrayidx142
P7TraceCount_add152	P7TraceCount_arrayidx151
P7TraceCount_add178	P7TraceCount_arrayidx177
P7TraceCount_add187	P7TraceCount_arrayidx186
P7TraceCount_add210	P7TraceCount_arrayidx209
P7TraceCount_add215	P7TraceCount_arrayidx214
P7TraceCount_add237	P7TraceCount_arrayidx236
P7TraceCount_add242	P7TraceCount_arrayidx241
P7TraceCount_add264	P7TraceCount_arrayidx263
P7TraceCount_add269	P7TraceCount_arrayidx268
P7Traces2Alignment_nins.0	P7Traces2Alignment_arrayidx60
P7Traces2Alignment_nins.0	P7Traces2Alignment_arrayidx67
P7Traces2Alignment_nins.0	P7Traces2Alignment_arrayidx76
P7Traces2Alignment_alen.0	P7Traces2Alignment_arrayidx120
P7Traces2Alignment_53	P7Traces2Alignment_arrayidx201
P7Traces2Alignment_conv230	P7Traces2Alignment_arrayidx235
P7Traces2Alignment_conv263	P7Traces2Alignment_arrayidx268
P7Traces2Alignment_alen.0	P7Traces2Alignment_alen341
P7Traces2Alignment_call342	P7Traces2Alignment_au
P7Traces2Alignment_call351	P7Traces2Alignment_arrayidx353
P7Traces2Alignment_96	P7Traces2Alignment_ss385
P7Traces2Alignment_104	P7Traces2Alignment_sa410
P7Traces2Alignment_109	P7Traces2Alignment_arrayidx427
P7Traces2Alignment_call434	P7Traces2Alignment_rf
CreateFancyAli_call1	CreateFancyAli_model
CreateFancyAli_call6	CreateFancyAli_mline
CreateFancyAli_call11	CreateFancyAli_aseq
CreateFancyAli_call25	CreateFancyAli_rfline26
CreateFancyAli_call38	CreateFancyAli_csline39
CreateFancyAli_call45	CreateFancyAli_query
CreateFancyAli_call46	CreateFancyAli_target
CreateFancyAli_28	CreateFancyAli_sqfrom
CreateFancyAli_33	CreateFancyAli_sqto
CreateFancyAli_conv108	CreateFancyAli_arrayidx111
CreateFancyAli_52	CreateFancyAli_arrayidx132
CreateFancyAli_58	CreateFancyAli_arrayidx145
CreateFancyAli_65	CreateFancyAli_arrayidx157
CreateFancyAli_conv174	CreateFancyAli_arrayidx177
CreateFancyAli_81	CreateFancyAli_arrayidx198
CreateFancyAli_conv215	CreateFancyAli_arrayidx218
CreateFancyAli_103	CreateFancyAli_arrayidx252
CreateFancyAli_109	CreateFancyAli_arrayidx266
CreateFancyAli_115	CreateFancyAli_arrayidx280
CreateFancyAli_122	CreateFancyAli_arrayidx293
CreateFancyAli_conv310	CreateFancyAli_arrayidx313
CreateFancyAli_conv352	CreateFancyAli_arrayidx355
CreateFancyAli_tpos.2	CreateFancyAli_len
TraceDecompose_add41	TraceDecompose_tlen44
TraceDecompose_25	TraceDecompose_arrayidx74
TraceDecompose_29	TraceDecompose_arrayidx82
TraceDecompose_33	TraceDecompose_arrayidx90
TraceDecompose_4	TraceDecompose_ret_tr
TraceDecompose_ntr.0	TraceDecompose_ret_ntr
TraceSimpleBounds_k1.2	TraceSimpleBounds_ret_k1
TraceSimpleBounds_i1.0	TraceSimpleBounds_ret_i1
TraceSimpleBounds_k2.2	TraceSimpleBounds_ret_k2
TraceSimpleBounds_i2.0	TraceSimpleBounds_ret_i2
MasterTraceFromMap_inc33	MasterTraceFromMap_tlen
ImposeMasterTrace_tpos.0	ImposeMasterTrace_tlen242
ImposeMasterTrace_1	ImposeMasterTrace_ret_tr
rightjustify_5	rightjustify_arrayidx32
specqsort_mul	thresh
specqsort_mul1	mthresh
specqsort_8	specqsort_j.1
specqsort_7	specqsort_i.0
specqsort_16	specqsort_i.1
specqsort_14	specqsort_i.1
qst_9	qst_i.0
qst_8	qst_j.1
sqd_regcomp_longest.0	sqd_regcomp_regmust62
sqd_regcomp_conv63	sqd_regcomp_regmlen64
sqd_regexec_arraydecay13	sqd_regexec_regstartp
sqd_regexec_arraydecay14	sqd_regexec_regendp
sqd_regsub_c.0	sqd_regsub_dst.0
regtry_0	regtry_arrayidx7
regmatch_incdec.ptr	regmatch_reginput17
regmatch_add.ptr36	regmatch_reginput35
regmatch_incdec.ptr51	regmatch_reginput50
regmatch_incdec.ptr67	regmatch_reginput66
regmatch_24	regmatch_arrayidx80
regmatch_29	regmatch_arrayidx98
regmatch_33	regmatch_reginput117
regmatch_add.ptr142	regmatch_reginput143
regtail_conv8	regtail_add.ptr
regtail_conv10	regtail_add.ptr11
regbranch_or	regbranch_flagp
regbranch_or13	regbranch_flagp
regpiece_2	regpiece_flagp
regpiece_incdec.ptr	regpiece_regparse63
reginsert_add	reginsert_regsize
reginsert_add.ptr3	reginsert_regcode2
reginsert_op	reginsert_opnd
regatom_incdec.ptr	regatom_regparse
regatom_or	regatom_flagp
regatom_incdec.ptr11	regatom_regparse10
regatom_incdec.ptr21	regatom_regparse20
regatom_incdec.ptr24	regatom_regparse23
regatom_incdec.ptr55	regatom_regparse54
regatom_or62	regatom_flagp
regatom_or69	regatom_flagp
regatom_incdec.ptr81	regatom_regparse80
regatom_or83	regatom_flagp
regatom_incdec.ptr85	regatom_regparse84
regatom_or109	regatom_flagp
regatom_or113	regatom_flagp
regatom_incdec.ptr121	regatom_regparse120
regnode_add	regnode_regsize
regnode_op	regnode_0
regnode_incdec.ptr3	regnode_regcode4
MSAAlloc_3	MSAAlloc_aseq
MSAAlloc_5	MSAAlloc_sqname
MSAAlloc_7	MSAAlloc_sqlen
MSAAlloc_9	MSAAlloc_wgt
MSAAlloc_call23	MSAAlloc_arrayidx26
MSAAlloc_call32	MSAAlloc_index
MSAExpand_add	MSAExpand_nseqalloc
MakeAlignedString_6	MakeAlignedString_arrayidx31
MakeAlignedString_call	MakeAlignedString_ret_s
MakeDealignedString_6	MakeDealignedString_arrayidx31
MakeDealignedString_call	MakeDealignedString_ret_s
WritePairwiseAlignment_16	WritePairwiseAlignment_arrayidx109
MingapAlignment_16	MingapAlignment_arrayidx65
MingapAlignment_20	MingapAlignment_arrayidx77
MingapAlignment_24	MingapAlignment_arrayidx87
MingapAlignment_mpos.0	MingapAlignment_alen
RandomAlignment_conv3	RandomAlignment_arrayidx5
RandomAlignment_11	RandomAlignment_arrayidx42
RandomAlignment_inc90	RandomAlignment_arrayidx89
RandomAlignment_20	RandomAlignment_arrayidx121
RandomAlignment_call142	RandomAlignment_arrayidx144
RandomAlignment_28	RandomAlignment_arrayidx173
RandomAlignment_33	RandomAlignment_arrayidx203
RandomAlignment_alen.0	RandomAlignment_alen215
RandomAlignment_37	RandomAlignment_sqinfo220
RandomAlignment_23	RandomAlignment_ret_aseqs
ReadClustal_call1	ReadClustal_s
ReadClustal_call13	ReadClustal_s
ReadClustal_call35	ReadClustal_lastidx36
ReadClustal_call39	ReadClustal_arrayidx42
Cluster_3	Cluster_arrayidx
Cluster_5	Cluster_arrayidx16
Cluster_col.0	Cluster_arrayidx31
Cluster_16	Cluster_left
Cluster_17	Cluster_right
Cluster_sub94	Cluster_parent
Cluster_sub107	Cluster_parent113
Cluster_min.0	Cluster_diff118
Cluster_min.0	Cluster_arrayidx121
Cluster_min.0	Cluster_rblen
Cluster_min.0	Cluster_lblen
Cluster_sub142	Cluster_lblen141
Cluster_sub158	Cluster_rblen157
Cluster_inc168	Cluster_incnum
Cluster_add186	Cluster_incnum185
Cluster_conv207	Cluster_arrayidx205
Cluster_inc221	Cluster_incnum220
Cluster_add241	Cluster_incnum240
Cluster_conv263	Cluster_arrayidx260
Cluster_55	Cluster_arrayidx287
Cluster_54	Cluster_arrayidx289
Cluster_59	Cluster_arrayidx307
Cluster_57	Cluster_arrayidx311
Cluster_63	Cluster_arrayidx322
Cluster_62	Cluster_arrayidx324
Cluster_65	Cluster_arrayidx337
Cluster_64	Cluster_arrayidx339
Cluster_69	Cluster_arrayidx357
Cluster_67	Cluster_arrayidx361
Cluster_73	Cluster_arrayidx372
Cluster_72	Cluster_arrayidx374
Cluster_conv392	Cluster_arrayidx396
Cluster_cond	Cluster_arrayidx419
Cluster_cond442	Cluster_arrayidx446
Cluster_conv458	Cluster_arrayidx462
Cluster_103	Cluster_arrayidx477
Cluster_sub482	Cluster_arrayidx485
Cluster_call45	Cluster_ret_tree
AllocPhylo_call18	AllocPhylo_is_in
MakeDiffMx_conv7	MakeDiffMx_arrayidx11
MakeDiffMx_conv7	MakeDiffMx_arrayidx15
MakeDiffMx_call	MakeDiffMx_ret_dmx
MakeIdentityMx_call6	MakeIdentityMx_arrayidx10
MakeIdentityMx_call6	MakeIdentityMx_arrayidx14
MakeIdentityMx_call	MakeIdentityMx_ret_imx
PrintNewHampshireTree_18	PrintNewHampshireTree_arrayidx35
PrintNewHampshireTree_22	PrintNewHampshireTree_arrayidx44
ParsePAMFile_sub	ParsePAMFile_arrayidx45
ParsePAMFile_13	ParsePAMFile_arrayidx72
ParsePAMFile_call115	ParsePAMFile_arrayidx123
ParsePAMFile_scale.1	ParsePAMFile_ret_scale
ParsePAMFile_conv140	ParsePAMFile_ret_scale
ParsePAMFile_11	ParsePAMFile_ret_pam
EnvFileOpen_call26	EnvFileOpen_ret_dir
Getopt_7	Getopt_ret_optind
Getopt_inc	Getopt.optind
Getopt_12	Getopt_ret_optind
Getopt_call26	Getopt.optptr
Getopt_incdec.ptr	Getopt.optptr
Getopt_35	Getopt_ret_optname
Getopt_38	Getopt_ret_optarg
Getopt_inc94	Getopt.optind
Getopt_44	Getopt_ret_optarg
Getopt_add105	Getopt.optind
Getopt_inc116	Getopt.optind
Getopt_add.ptr	Getopt.optptr
Getopt_60	Getopt_ret_optname
Getopt_add.ptr167	Getopt_ret_optarg
Getopt_inc168	Getopt.optind
Getopt_68	Getopt_ret_optarg
Getopt_add177	Getopt.optind
Getopt_incdec.ptr190	Getopt.optptr
Getopt_inc192	Getopt.optind
Getopt_89	Getopt_ret_optind
GKIFree_5	GKIFree_arrayidx21
GKIStoreKey_3	GKIStoreKey_arrayidx4
GKIStoreKey_call6	GKIStoreKey_key10
GKIStoreKey_11	GKIStoreKey_idx
GKIStoreKey_1	GKIStoreKey_nxt
GKIStoreKey_inc	GKIStoreKey_nkeys22
gki_alloc_4	gki_alloc_nhash
gki_alloc_7	gki_alloc_table
gki_upsize_optr.0	gki_upsize_arrayidx10
gki_upsize_7	gki_upsize_nxt14
gki_upsize_14	gki_upsize_primelevel17
gki_upsize_15	gki_upsize_nhash19
gki_upsize_16	gki_upsize_table21
GSIOpen_call1	GSIOpen_gsifp
GSIOpen_call22	GSIOpen_nfiles23
GSIOpen_call25	GSIOpen_recnum26
GSIGetRecord_call29	GSIGetRecord_f2
GSIGetRecord_call33	GSIGetRecord_f3
GSIGetOffset_7	GSIGetOffset_ret_format
GSIGetOffset_conv38	GSIGetOffset_ret_offset
GSIAllocIndex_3	GSIAllocIndex_filenames
GSIAllocIndex_5	GSIAllocIndex_fmt
GSIAllocIndex_7	GSIAllocIndex_elems
GSIAddFileToIndex_call2	GSIAddFileToIndex_arrayidx
GSIAddFileToIndex_inc	GSIAddFileToIndex_nfiles7
GSIAddFileToIndex_11	GSIAddFileToIndex_filenames18
GSIAddFileToIndex_16	GSIAddFileToIndex_fmt26
GSIAddKeyToIndex_conv	GSIAddKeyToIndex_filenum19
GSIAddKeyToIndex_conv20	GSIAddKeyToIndex_offset25
GSIAddKeyToIndex_inc	GSIAddKeyToIndex_nkeys26
GSIAddKeyToIndex_17	GSIAddKeyToIndex_elems35
GSIWriteHeader_conv	GSIWriteHeader_f1
GSIWriteHeader_conv4	GSIWriteHeader_f2
GSIWriteHeader_call	GSIWriteHeader_f1
GSIWriteHeader_call5	GSIWriteHeader_f2
GSIWriteFileRecord_conv	GSIWriteFileRecord_f1
GSIWriteFileRecord_call7	GSIWriteFileRecord_f1
GSIWriteFileRecord_call8	GSIWriteFileRecord_f2
GSIWriteKeyRecord_conv	GSIWriteKeyRecord_f1
GSIWriteKeyRecord_conv7	GSIWriteKeyRecord_f2
GSIWriteKeyRecord_call8	GSIWriteKeyRecord_f1
GSIWriteKeyRecord_call9	GSIWriteKeyRecord_f2
Strparse_call32	Strparse_arrayidx34
sqd_regcomp_arraydecay	sqd_regcomp_regcode
sqd_regcomp_arraydecay20	sqd_regcomp_regcode21
sqd_regcomp_8	sqd_regcomp_regstart38
ReadSELEX_17	ReadSELEX_sqinfo
ReadSELEX_21	ReadSELEX_sqinfo66
ReadSELEX_conv102	ReadSELEX_lcol105
ReadSELEX_conv130	ReadSELEX_rcol133
ReadSELEX_or	ReadSELEX_flags154
ReadSELEX_or166	ReadSELEX_flags165
ReadSELEX_call252	ReadSELEX_cs
ReadSELEX_call259	ReadSELEX_rf
ReadSELEX_call268	ReadSELEX_arrayidx270
ReadSELEX_call280	ReadSELEX_ss
ReadSELEX_call295	ReadSELEX_sa
ReadSELEX_alen.0	ReadSELEX_alen303
ReadSELEX_num.0	ReadSELEX_nseq
ReadSELEX_61	ReadSELEX_wgt
ReadSELEX_call331	ReadSELEX_au
ReadSELEX_call341	ReadSELEX_name342
ReadSELEX_call352	ReadSELEX_acc
ReadSELEX_call362	ReadSELEX_desc
ReadSELEX_conv374	ReadSELEX_ga1
ReadSELEX_conv381	ReadSELEX_ga2
ReadSELEX_or383	ReadSELEX_flags382
ReadSELEX_conv395	ReadSELEX_tc1
ReadSELEX_conv402	ReadSELEX_tc2
ReadSELEX_or404	ReadSELEX_flags403
ReadSELEX_conv416	ReadSELEX_nc1
ReadSELEX_conv423	ReadSELEX_nc2
ReadSELEX_or425	ReadSELEX_flags424
ReadSELEX_conv456	ReadSELEX_arrayidx459
ReadSELEX_171	ReadSELEX_arrayidx802
ReadSELEX_190	ReadSELEX_arrayidx877
ReadSELEX_count.0	ReadSELEX_len
ReadSELEX_or963	ReadSELEX_flags962
DealignAseqs_call6	DealignAseqs_arrayidx8
DealignAseqs_17	DealignAseqs_arrayidx63
DealignAseqs_1	DealignAseqs_ret_rseqs
copy_alignment_line_6	copy_alignment_line_s1.0
seqencode_conv6	seqencode_str.addr.0
seqencode_7	seqencode_ptr.0
MSAExpand_6	MSAExpand_aseq2
MSAExpand_11	MSAExpand_sqname7
MSAExpand_16	MSAExpand_sqlen12
MSAExpand_21	MSAExpand_wgt17
MSAExpand_27	MSAExpand_ss24
MSAExpand_32	MSAExpand_sslen29
MSAExpand_38	MSAExpand_sa38
MSAExpand_43	MSAExpand_salen43
MSAExpand_49	MSAExpand_sqacc53
MSAExpand_55	MSAExpand_sqdesc63
MSAExpand_call100	MSAExpand_arrayidx103
MSAExpand_call126	MSAExpand_arrayidx129
MSAExpand_call154	MSAExpand_arrayidx157
MSAExpand_98	MSAExpand_arrayidx189
MSAExpand_114	MSAExpand_arrayidx233
MSASetSeqAccession_3	MSASetSeqAccession_sqacc1
MSASetSeqAccession_call6	MSASetSeqAccession_arrayidx9
MSASetSeqDescription_3	MSASetSeqDescription_sqdesc1
MSASetSeqDescription_call6	MSASetSeqDescription_arrayidx9
MSAAddComment_2	MSAAddComment_comment1
MSAAddComment_add	MSAAddComment_alloc_ncomment5
MSAAddComment_10	MSAAddComment_comment9
MSAAddComment_call11	MSAAddComment_arrayidx
MSAAddComment_inc	MSAAddComment_ncomment14
MSAAddGF_2	MSAAddGF_gf_tag1
MSAAddGF_4	MSAAddGF_gf
MSAAddGF_add	MSAAddGF_alloc_ngf6
MSAAddGF_12	MSAAddGF_gf_tag10
MSAAddGF_17	MSAAddGF_gf16
MSAAddGF_call18	MSAAddGF_arrayidx
MSAAddGF_call21	MSAAddGF_arrayidx25
MSAAddGF_inc	MSAAddGF_ngf26
MSAAddGS_call	MSAAddGS_gs_idx
MSAAddGS_3	MSAAddGS_gs_tag4
MSAAddGS_5	MSAAddGS_gs
MSAAddGS_8	MSAAddGS_arrayidx
MSAAddGS_19	MSAAddGS_gs_tag25
MSAAddGS_24	MSAAddGS_gs32
MSAAddGS_27	MSAAddGS_arrayidx40
MSAAddGS_call60	MSAAddGS_arrayidx63
MSAAddGS_inc65	MSAAddGS_ngs64
MSAAddGS_call75	MSAAddGS_arrayidx80
MSAAppendGC_2	MSAAppendGC_gc_tag1
MSAAppendGC_4	MSAAppendGC_gc
MSAAppendGC_call3	MSAAppendGC_gc_idx
MSAAppendGC_13	MSAAppendGC_gc_tag15
MSAAppendGC_18	MSAAppendGC_gc22
MSAAppendGC_call30	MSAAppendGC_arrayidx33
MSAAppendGC_inc	MSAAppendGC_ngc34
MSAAppendGR_2	MSAAppendGR_gr_tag1
MSAAppendGR_4	MSAAppendGR_gr
MSAAppendGR_7	MSAAppendGR_arrayidx
MSAAppendGR_call11	MSAAppendGR_gr_idx
MSAAppendGR_19	MSAAppendGR_gr_tag25
MSAAppendGR_24	MSAAppendGR_gr32
MSAAppendGR_27	MSAAppendGR_arrayidx40
MSAAppendGR_call60	MSAAppendGR_arrayidx63
MSAAppendGR_inc65	MSAAppendGR_ngr64
MSAVerifyParse_6	MSAVerifyParse_alen
MSAFileOpen_3	MSAFileOpen_f
MSAFileOpen_call2	MSAFileOpen_fname
MSAFileOpen_call3	MSAFileOpen_f4
MSAFileOpen_call11	MSAFileOpen_f12
MSAFileOpen_call27	MSAFileOpen_fname28
MSAFileOpen_format.addr.0	MSAFileOpen_format46
MSAFileGetLine_inc	MSAFileGetLine_linenumber
MSAGetSeqidx_call13	MSAGetSeqidx_arrayidx16
MSAGetSeqidx_inc	MSAGetSeqidx_nseq17
MSAFromAINFO_7	MSAFromAINFO_arrayidx10
MSAFromAINFO_call13	MSAFromAINFO_arrayidx15
MSAFromAINFO_11	MSAFromAINFO_arrayidx18
MSAFromAINFO_27	MSAFromAINFO_ss52
MSAFromAINFO_30	MSAFromAINFO_sslen
MSAFromAINFO_40	MSAFromAINFO_arrayidx84
MSAFromAINFO_47	MSAFromAINFO_sa100
MSAFromAINFO_50	MSAFromAINFO_salen
MSAFromAINFO_60	MSAFromAINFO_arrayidx135
MSAFromAINFO_call141	MSAFromAINFO_name142
MSAFromAINFO_call144	MSAFromAINFO_desc145
MSAFromAINFO_call147	MSAFromAINFO_acc148
MSAFromAINFO_call149	MSAFromAINFO_au150
MSAFromAINFO_call151	MSAFromAINFO_ss_cons
MSAFromAINFO_call152	MSAFromAINFO_rf153
MSAFromAINFO_69	MSAFromAINFO_arrayidx158
MSAFromAINFO_70	MSAFromAINFO_arrayidx161
MSAFromAINFO_72	MSAFromAINFO_arrayidx170
MSAFromAINFO_73	MSAFromAINFO_arrayidx174
MSAFromAINFO_75	MSAFromAINFO_arrayidx183
MSAFromAINFO_76	MSAFromAINFO_arrayidx187
MSAFromAINFO_77	MSAFromAINFO_nseq192
MSAFromAINFO_78	MSAFromAINFO_alen194
MSAShorterAlignment_5	MSAShorterAlignment_arrayidx15
MSAShorterAlignment_13	MSAShorterAlignment_arrayidx31
MSAShorterAlignment_21	MSAShorterAlignment_arrayidx49
MSAShorterAlignment_31	MSAShorterAlignment_arrayidx73
MSAShorterAlignment_37	MSAShorterAlignment_arrayidx85
MSAShorterAlignment_41	MSAShorterAlignment_arrayidx94
MSAShorterAlignment_45	MSAShorterAlignment_arrayidx103
MSAShorterAlignment_50	MSAShorterAlignment_arrayidx116
MSAShorterAlignment_mpos.0	MSAShorterAlignment_alen125
MSASmallerAlignment_call15	MSASmallerAlignment_arrayidx18
MSASmallerAlignment_call22	MSASmallerAlignment_arrayidx25
MSASmallerAlignment_16	MSASmallerAlignment_arrayidx34
MSASmallerAlignment_30	MSASmallerAlignment_ss58
MSASmallerAlignment_call63	MSASmallerAlignment_arrayidx66
MSASmallerAlignment_40	MSASmallerAlignment_sa85
MSASmallerAlignment_call90	MSASmallerAlignment_arrayidx93
MSASmallerAlignment_nnew.0	MSASmallerAlignment_nseq100
MSASmallerAlignment_44	MSASmallerAlignment_alen102
MSASmallerAlignment_45	MSASmallerAlignment_flags103
MSASmallerAlignment_46	MSASmallerAlignment_type104
MSASmallerAlignment_call105	MSASmallerAlignment_name106
MSASmallerAlignment_call107	MSASmallerAlignment_desc108
MSASmallerAlignment_call109	MSASmallerAlignment_acc110
MSASmallerAlignment_call111	MSASmallerAlignment_au112
MSASmallerAlignment_call113	MSASmallerAlignment_ss_cons114
MSASmallerAlignment_call115	MSASmallerAlignment_sa_cons116
MSASmallerAlignment_call117	MSASmallerAlignment_rf118
MSASmallerAlignment_54	MSASmallerAlignment_arrayidx127
MSASmallerAlignment_55	MSASmallerAlignment_arrayidx132
MSASmallerAlignment_call	MSASmallerAlignment_ret_new
ReadMSF_alleged_type.0	ReadMSF_type38
ReadMSF_call71	ReadMSF_sp
ReadMSF_add.ptr	ReadMSF_sp
ReadMSF_call81	ReadMSF_arrayidx
ReadMSF_inc	ReadMSF_nseq
ReadMSF_call82	ReadMSF_sp
ReadMSF_add.ptr90	ReadMSF_sp
ReadMSF_conv93	ReadMSF_arrayidx95
ReadMSF_or	ReadMSF_flags
ReadMSF_call109	ReadMSF_sp
ReadMSF_call149	ReadMSF_arrayidx152
ReadMSF_64	ReadMSF_sp
ReadMSF_dec	ReadMSF_arrayidx186
ReadMSF_70	ReadMSF_71
ReadMSF_incdec.ptr188	ReadMSF_sp
WriteMSF_call7	WriteMSF_arrayidx9
WriteMSF_call12	WriteMSF_arrayidx14
WriteMSF_call183	WriteMSF_type184
WriteMSF_call229	WriteMSF_now
ReadPhylip_call1	ReadPhylip_s
ReadPhylip_call21	ReadPhylip_s
ReadPhylip_call37	ReadPhylip_arrayidx39
ReadPhylip_add.ptr	ReadPhylip_s
ReadPhylip_call51	ReadPhylip_arrayidx54
ReadPhylip_nseq.0	ReadPhylip_nseq61
revcomp_c.1	revcomp_s.0
coded_revcomp_2	coded_revcomp_fwdp.0
seqdecode_3	seqdecode_arrayidx15
seqndecode_2	seqndecode_arrayidx13
StrShuffle_1	StrShuffle_arrayidx10
StrShuffle_0	StrShuffle_arrayidx13
StrDPShuffle_call14	StrDPShuffle_arrayidx16
StrDPShuffle_conv35	StrDPShuffle_arrayidx41
StrDPShuffle_inc44	StrDPShuffle_arrayidx43
StrDPShuffle_20	StrDPShuffle_arrayidx90
StrDPShuffle_conv91	StrDPShuffle_arrayidx98
StrDPShuffle_35	StrDPShuffle_arrayidx199
StrDPShuffle_conv200	StrDPShuffle_arrayidx205
StrDPShuffle_conv227	StrDPShuffle_arrayidx230
StrDPShuffle_inc240	StrDPShuffle_arrayidx239
StrDPShuffle_conv252	StrDPShuffle_arrayidx255
StrMarkov0_conv18	StrMarkov0_arrayidx16
StrMarkov0_conv30	StrMarkov0_arrayidx32
StrMarkov1_conv33	StrMarkov1_arrayidx31
StrMarkov1_conv48	StrMarkov1_arrayidx49
StrMarkov1_conv59	StrMarkov1_arrayidx61
StrReverse_1	StrReverse_arrayidx8
StrReverse_0	StrReverse_arrayidx10
StrReverse_2	StrReverse_arrayidx14
StrRegionalShuffle_1	StrRegionalShuffle_arrayidx22
StrRegionalShuffle_0	StrRegionalShuffle_arrayidx24
AlignmentShuffle_6	AlignmentShuffle_arrayidx34
AlignmentShuffle_4	AlignmentShuffle_arrayidx39
AlignmentBootstrap_1	AlignmentBootstrap_arrayidx11
QRNAShuffle_i.0	QRNAShuffle_arrayidx133
QRNAShuffle_i.0	QRNAShuffle_arrayidx166
QRNAShuffle_i.0	QRNAShuffle_arrayidx200
QRNAShuffle_42	QRNAShuffle_arrayidx232
QRNAShuffle_45	QRNAShuffle_arrayidx241
QRNAShuffle_47	QRNAShuffle_arrayidx246
QRNAShuffle_37	QRNAShuffle_arrayidx251
QRNAShuffle_39	QRNAShuffle_arrayidx256
QRNAShuffle_50	QRNAShuffle_arrayidx261
QRNAShuffle_57	QRNAShuffle_arrayidx290
QRNAShuffle_60	QRNAShuffle_arrayidx299
QRNAShuffle_62	QRNAShuffle_arrayidx304
QRNAShuffle_52	QRNAShuffle_arrayidx309
QRNAShuffle_54	QRNAShuffle_arrayidx314
QRNAShuffle_55	QRNAShuffle_arrayidx317
QRNAShuffle_71	QRNAShuffle_arrayidx347
QRNAShuffle_74	QRNAShuffle_arrayidx356
QRNAShuffle_76	QRNAShuffle_arrayidx361
QRNAShuffle_66	QRNAShuffle_arrayidx366
QRNAShuffle_68	QRNAShuffle_arrayidx371
QRNAShuffle_69	QRNAShuffle_arrayidx374
SetSeqinfoString_or	SetSeqinfoString_flags
SetSeqinfoString_or33	SetSeqinfoString_flags32
SetSeqinfoString_or45	SetSeqinfoString_flags44
SetSeqinfoString_or80	SetSeqinfoString_flags79
SetSeqinfoString_call87	SetSeqinfoString_start
SetSeqinfoString_or93	SetSeqinfoString_flags92
SetSeqinfoString_call100	SetSeqinfoString_stop
SetSeqinfoString_or106	SetSeqinfoString_flags105
SetSeqinfoString_call113	SetSeqinfoString_olen
SetSeqinfoString_or119	SetSeqinfoString_flags118
SeqinfoCopy_0	SeqinfoCopy_flags1
SeqinfoCopy_6	SeqinfoCopy_len36
SeqinfoCopy_8	SeqinfoCopy_start42
SeqinfoCopy_10	SeqinfoCopy_stop48
SeqinfoCopy_12	SeqinfoCopy_olen54
SeqinfoCopy_14	SeqinfoCopy_type60
SeqinfoCopy_call66	SeqinfoCopy_ss67
SeqinfoCopy_call73	SeqinfoCopy_sa74
ReadSeq_call	ReadSeq_msa6
ReadSeq_conv	ReadSeq_seqlen
ReadSeq_or	ReadSeq_flags111
ReadSeq_or143	ReadSeq_flags142
ReadSeq_inc	ReadSeq_lastidx146
ReadSeq_call153	ReadSeq_seq154
ReadSeq_108	ReadSeq_len
ReadSeq_or195	ReadSeq_flags194
ReadSeq_110	ReadSeq_ret_seq
SeqfileFormat_call45	SeqfileFormat_s
SeqfileFormat_68	SeqfileFormat_s
WriteSeq_82	WriteSeq_arrayidx306
WriteSeq_conv318	WriteSeq_arrayidx320
ReadMultipleRseqs_rseqs.0	ReadMultipleRseqs_ret_rseqs
ReadMultipleRseqs_sqinfo.0	ReadMultipleRseqs_ret_sqinfo
ReadMultipleRseqs_num.0	ReadMultipleRseqs_ret_num
readEMBL_32	readEMBL_stop
readEMBL_34	readEMBL_olen
readEMBL_or	readEMBL_flags
readPIR_26	readPIR_stop
readPIR_28	readPIR_olen
readPIR_or	readPIR_flags
readGCGdata_blen.0	readGCGdata_maxseq18
readGCGdata_call20	readGCGdata_seq21
readGCGdata_blen.0	readGCGdata_seqlen
addseq_add7	addseq_maxseq6
addseq_call	addseq_seq10
addseq_21	addseq_sq.0
addseq_conv34	addseq_seqlen35
addseq_add61	addseq_seqlen60
addseq_37	addseq_rpl89
addseq_rpl.0	addseq_lastrpl93
addseq_rpl.0	addseq_maxrpl97
addseq_45	addseq_bpl123
addseq_conv65	addseq_lastbpl127
addseq_conv65	addseq_maxbpl131
Linefit_div35	Linefit_ret_b
Linefit_sub37	Linefit_ret_a
Linefit_conv44	Linefit_ret_r
WeightedLinefit_conv44	WeightedLinefit_ret_m
WeightedLinefit_conv45	WeightedLinefit_ret_b
FMX2Alloc_3	FMX2Alloc_arrayidx
FMX2Alloc_add.ptr	FMX2Alloc_arrayidx9
DMX2Alloc_3	DMX2Alloc_arrayidx
DMX2Alloc_add.ptr	DMX2Alloc_arrayidx9
FMX2Multiply_add	FMX2Multiply_arrayidx20
sre_random_conv	sre_random.rnd1
sre_random_conv1	sre_random.rnd2
sre_random_sub	sre_random.rnd1
sre_random_add	sre_random.rnd1
sre_random_sub12	sre_random.rnd2
sre_random_add16	sre_random.rnd2
sre_random_sub18	sre_random_arrayidx
sre_random_add26	sre_random_arrayidx25
sre_random_sub33	sre_random.rnd1
sre_random_add37	sre_random.rnd1
sre_random_sub43	sre_random.rnd2
sre_random_add47	sre_random.rnd2
sre_random_24	sre_random.rnd
sre_random_sub56	sre_random_arrayidx58
sre_random_add66	sre_random_arrayidx65
sre_srandom_seed.addr.1	sre_randseed
Gaussrandom_call	Gaussrandom.u
Gaussrandom_add	Gaussrandom.u
Gaussrandom_mul	Gaussrandom.u
Gaussrandom_conv	Gaussrandom.i
Gaussrandom_.conv	Gaussrandom.i
Gaussrandom_sub10	Gaussrandom.ustar
Gaussrandom_12	Gaussrandom.aa
Gaussrandom_mul23	Gaussrandom.w
Gaussrandom_add24	Gaussrandom.y
Gaussrandom_26	Gaussrandom.snorm
Gaussrandom_sub28	Gaussrandom.snorm
Gaussrandom_call32	Gaussrandom.u
Gaussrandom_mul35	Gaussrandom.w
Gaussrandom_mul38	Gaussrandom.tt
Gaussrandom_42	Gaussrandom.tt
Gaussrandom_call39	Gaussrandom.ustar
Gaussrandom_call44	Gaussrandom.u
Gaussrandom_call49	Gaussrandom.ustar
Gaussrandom_44	Gaussrandom.aa
Gaussrandom_add52	Gaussrandom.aa
Gaussrandom_add53	Gaussrandom.i
Gaussrandom_add54	Gaussrandom.u
Gaussrandom_sub59	Gaussrandom.u
Gaussrandom_mul62	Gaussrandom.w
Gaussrandom_mul65	Gaussrandom.tt
Gaussrandom_65	Gaussrandom.tt
Gaussrandom_call66	Gaussrandom.ustar
Gaussrandom_call71	Gaussrandom.u
Gaussrandom_call76	Gaussrandom.u
Strinsert_c.addr.0	Strinsert_s.0
Strdelete_1	Strdelete_s.0
s2lower_conv3	s2lower_s.addr.0
s2upper_conv3	s2upper_s.addr.0
RandomSequence_1	RandomSequence_arrayidx4
sre_fgets_call	sre_fgets_buf
sre_fgets_add	sre_fgets_n
sre_fgets_call16	sre_fgets_buf
sre_strcat_call23	sre_strcat_dest
sre_strcat_call29	sre_strcat_dest
sre_strtok_add.ptr2	sre_strtok_s
sre_strtok_add.ptr6	sre_strtok_s
sre_strtok_conv	sre_strtok_len
SSIOpen_call1	SSIOpen_fp
SSIOpen_0	SSIOpen_ret_sfp
SSIGetOffsetByName_conv	SSIGetOffsetByName_ret_fh
SSIGetOffsetByNumber_conv27	SSIGetOffsetByNumber_ret_fh
SSIGetSubseqOffset_add33	SSIGetSubseqOffset_i3235
SSIGetSubseqOffset_add49	SSIGetSubseqOffset_i6451
SSIGetSubseqOffset_add64	SSIGetSubseqOffset_i3266
SSIGetSubseqOffset_add78	SSIGetSubseqOffset_i6480
SSIGetSubseqOffset_add84	SSIGetSubseqOffset_ret_actual_start
SSIFileInfo_2	SSIFileInfo_ret_filename
SSIFileInfo_4	SSIFileInfo_ret_format
SSICreateIndex_2	SSICreateIndex_ptmpfile
SSICreateIndex_3	SSICreateIndex_stmpfile
SSICreateIndex_4	SSICreateIndex_filenames5
SSICreateIndex_5	SSICreateIndex_fileformat10
SSICreateIndex_6	SSICreateIndex_bpl15
SSICreateIndex_7	SSICreateIndex_rpl20
SSICreateIndex_8	SSICreateIndex_pkeys25
SSICreateIndex_9	SSICreateIndex_skeys30
SSIGetFilePosition_conv	SSIGetFilePosition_i32
SSIAddFileToIndex_add6	SSIAddFileToIndex_flen7
SSIAddFileToIndex_call9	SSIAddFileToIndex_arrayidx
SSIAddFileToIndex_conv21	SSIAddFileToIndex_ret_fh
SSIAddFileToIndex_inc	SSIAddFileToIndex_nfiles22
SSIAddFileToIndex_16	SSIAddFileToIndex_filenames34
SSIAddFileToIndex_21	SSIAddFileToIndex_fileformat47
SSIAddFileToIndex_26	SSIAddFileToIndex_bpl60
SSIAddFileToIndex_31	SSIAddFileToIndex_rpl73
SSIAddPrimaryKeyToIndex_add27	SSIAddPrimaryKeyToIndex_plen28
SSIAddPrimaryKeyToIndex_inc	SSIAddPrimaryKeyToIndex_nprimary57
SSIAddPrimaryKeyToIndex_call59	SSIAddPrimaryKeyToIndex_key61
SSIAddPrimaryKeyToIndex_conv66	SSIAddPrimaryKeyToIndex_fnum
SSIAddPrimaryKeyToIndex_inc104	SSIAddPrimaryKeyToIndex_nprimary103
SSIAddPrimaryKeyToIndex_37	SSIAddPrimaryKeyToIndex_pkeys114
SSIAddSecondaryKeyToIndex_add17	SSIAddSecondaryKeyToIndex_slen18
SSIAddSecondaryKeyToIndex_inc	SSIAddSecondaryKeyToIndex_nsecondary24
SSIAddSecondaryKeyToIndex_call26	SSIAddSecondaryKeyToIndex_key28
SSIAddSecondaryKeyToIndex_call33	SSIAddSecondaryKeyToIndex_pkey38
SSIAddSecondaryKeyToIndex_inc44	SSIAddSecondaryKeyToIndex_nsecondary43
SSIAddSecondaryKeyToIndex_17	SSIAddSecondaryKeyToIndex_skeys54
SSIWriteIndex_call40	SSIWriteIndex_ptmp41
SSIWriteIndex_call58	SSIWriteIndex_stmp59
load_indexfile_conv	load_indexfile_imode
load_indexfile_conv23	load_indexfile_smode
load_indexfile_27	load_indexfile_filename97
load_indexfile_31	load_indexfile_fileformat112
load_indexfile_33	load_indexfile_fileflags121
load_indexfile_35	load_indexfile_bpl130
load_indexfile_37	load_indexfile_rpl139
load_indexfile_call162	load_indexfile_arrayidx165
read_i16_call1	read_i16_ret_result
indexfile_position_add	indexfile_position_i324
indexfile_position_add14	indexfile_position_i6416
read_i32_call1	read_i32_ret_result
activate_external_sort_call9	activate_external_sort_ptmp
activate_external_sort_call13	activate_external_sort_stmp
write_i32_call	write_i32_n.addr
write_i16_call	write_i16_n.addr
write_i64_call	write_i64_n.addr
parse_pkey_info_call	parse_pkey_info_key
parse_pkey_info_conv	parse_pkey_info_fnum
parse_pkey_info_conv17	parse_pkey_info_i32
parse_pkey_info_conv26	parse_pkey_info_i3229
parse_pkey_info_conv37	parse_pkey_info_len
parse_skey_info_call	parse_skey_info_key
parse_skey_info_call1	parse_skey_info_pkey
read_i64_call1	read_i64_ret_result
PushIntStack_3	PushIntStack_nxt2
PushIntStack_0	PushIntStack_nxt3
PopIntStack_2	PopIntStack_nxt3
PopIntStack_3	PopIntStack_ret_data
ReverseIntStack_2	ReverseIntStack_nxt4
ReverseIntStack_old.0	ReverseIntStack_nxt5
parse_gf_call19	parse_gf_name
parse_gf_call24	parse_gf_acc
parse_gf_call30	parse_gf_desc
parse_gf_call36	parse_gf_au
parse_gf_text.0	parse_gf_s
parse_gf_conv48	parse_gf_arrayidx
parse_gf_conv55	parse_gf_arrayidx57
parse_gf_conv72	parse_gf_arrayidx74
parse_gf_conv82	parse_gf_arrayidx84
parse_gf_conv99	parse_gf_arrayidx101
parse_gf_conv109	parse_gf_arrayidx111
parse_gs_call19	parse_gs_lastidx20
parse_gs_conv26	parse_gs_arrayidx
parse_gs_or	parse_gs_flags
parse_gr_call13	parse_gr_lastidx14
parse_gr_9	parse_gr_ss21
parse_gr_12	parse_gr_sslen
parse_gr_call40	parse_gr_arrayidx43
parse_gr_25	parse_gr_sa55
parse_gr_28	parse_gr_salen
parse_gr_call81	parse_gr_arrayidx84
parse_comment_add.ptr	parse_comment_s
parse_sequence_call5	parse_sequence_lastidx6
parse_sequence_call9	parse_sequence_arrayidx12
actually_write_stockholm_100	actually_write_stockholm_s
Byteswap_1	Byteswap_arrayidx7
Byteswap_0	Byteswap_arrayidx9
DScale_mul	DScale_arrayidx
FScale_mul	FScale_arrayidx
DAdd_add	DAdd_arrayidx2
FAdd_add	FAdd_arrayidx2
DCopy_0	DCopy_arrayidx2
FCopy_0	FCopy_arrayidx2
DNorm_div	DNorm_arrayidx
DNorm_div5	DNorm_arrayidx7
FNorm_div	FNorm_arrayidx
FNorm_conv11	FNorm_arrayidx13
DLog_call	DLog_arrayidx5
FLog_conv6	FLog_arrayidx8
DExp_call	DExp_arrayidx2
FExp_conv1	FExp_arrayidx3
GSCWeights_conv20	GSCWeights_arrayidx22
GSCWeights_10	GSCWeights_arrayidx30
VoronoiWeights_conv26	VoronoiWeights_arrayidx28
VoronoiWeights_call42	VoronoiWeights_arrayidx44
VoronoiWeights_conv142	VoronoiWeights_arrayidx148
VoronoiWeights_inc151	VoronoiWeights_arrayidx150
VoronoiWeights_inc167	VoronoiWeights_arrayidx166
VoronoiWeights_conv200	VoronoiWeights_arrayidx202
VoronoiWeights_conv247	VoronoiWeights_arrayidx244
VoronoiWeights_div258	VoronoiWeights_arrayidx260
BlosumWeights_inc10	BlosumWeights_arrayidx9
BlosumWeights_conv24	BlosumWeights_arrayidx26
SingleLinkCluster_i.0	SingleLinkCluster_arrayidx
SingleLinkCluster_6	SingleLinkCluster_arrayidx13
SingleLinkCluster_nc.0	SingleLinkCluster_arrayidx24
SingleLinkCluster_12	SingleLinkCluster_arrayidx48
SingleLinkCluster_11	SingleLinkCluster_arrayidx51
SingleLinkCluster_5	SingleLinkCluster_ret_c
SingleLinkCluster_nc.0	SingleLinkCluster_ret_nc
PositionBasedWeights_inc22	PositionBasedWeights_arrayidx21
PositionBasedWeights_conv70	PositionBasedWeights_arrayidx68
PositionBasedWeights_div88	PositionBasedWeights_arrayidx87
FilterAlignment_i.1	FilterAlignment_arrayidx43
SampleAlignment_i.0	SampleAlignment_arrayidx
SampleAlignment_16	SampleAlignment_arrayidx36
upweight_add14	upweight_arrayidx16
upweight_add25	upweight_arrayidx27
downweight_mul	downweight_arrayidx19
downweight_mul30	downweight_arrayidx32
downweight_div56	downweight_arrayidx58
downweight_div63	downweight_arrayidx65
simple_diffmx_2	simple_diffmx_arrayidx
simple_diffmx_call23	simple_diffmx_arrayidx27
simple_diffmx_call23	simple_diffmx_arrayidx31
simple_diffmx_0	simple_diffmx_ret_dmx
