/* BEGIN software license
 *
 * msXpertSuite - mass spectrometry software suite
 * -----------------------------------------------
 * Copyright(C) 2009,...,2018 Filippo Rusconi
 *
 * http://www.msxpertsuite.org
 *
 * This file is part of the msXpertSuite project.
 *
 * The msXpertSuite project is the successor of the massXpert project. This
 * project now includes various independent modules:
 *
 * - massXpert, model polymer chemistries and simulate mass spectrometric data;
 * - mineXpert, a powerful TIC chromatogram/mass spectrum viewer/miner;
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program. If not, see <http://www.gnu.org/licenses/>.
 *
 * END software license
 */


/////////////////////// Local includes
#include <massxpert/nongui/CleaveOligomer.hpp>


namespace msXpSmassXpert
{

CleaveOligomer::CleaveOligomer(Polymer *polymer,
                               const QString &name,
                               const QString &description,
                               bool modified,
                               const Ponderable &ponderable,
                               int startIndex,
                               int endIndex,
                               int partialCleavage,
                               const CalcOptions &calcOptions)
  : Oligomer(polymer,
             name,
             description,
             modified,
             ponderable,
             startIndex,
             endIndex,
             calcOptions),
    m_partialCleavage(partialCleavage)
{
}


CleaveOligomer::CleaveOligomer(Polymer *polymer,
                               const QString &name,
                               const QString &description,
                               bool modified,
                               double mono,
                               double avg,
                               int startIndex,
                               int endIndex,
                               int partialCleavage,
                               const CalcOptions &calcOptions)
  : Oligomer(polymer,
             name,
             description,
             modified,
             mono,
             avg,
             startIndex,
             endIndex,
             calcOptions),
    m_partialCleavage(partialCleavage)
{
}


CleaveOligomer::CleaveOligomer(const CleaveOligomer &oligomer)
  : Oligomer(oligomer), m_partialCleavage(oligomer.m_partialCleavage)
{
}


void
CleaveOligomer::setPartialCleavage(int value)
{
  m_partialCleavage = value;
}

int
CleaveOligomer::partialCleavage() const
{
  return m_partialCleavage;
}

} // namespace msXpSmassXpert
