/* BEGIN software license
 *
 * msXpertSuite - mass spectrometry software suite
 * -----------------------------------------------
 * Copyright(C) 2009,...,2018 Filippo Rusconi
 *
 * http://www.msxpertsuite.org
 *
 * This file is part of the msXpertSuite project.
 *
 * The msXpertSuite project is the successor of the massXpert project. This
 * project now includes various independent modules:
 *
 * - massXpert, model polymer chemistries and simulate mass spectrometric data;
 * - mineXpert, a powerful TIC chromatogram/mass spectrum viewer/miner;
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program. If not, see <http://www.gnu.org/licenses/>.
 *
 * END software license
 */


#ifndef MASS_SEARCH_DLG_HPP
#define MASS_SEARCH_DLG_HPP


/////////////////////// Qt includes
#include <QMainWindow>
#include <QSortFilterProxyModel>


/////////////////////// Local includes
#include <ui_MassSearchDlg.h>
#include <massxpert/gui/AbstractSeqEdWndDependentDlg.hpp>
#include <massxpert/gui/SequenceEditorWnd.hpp>
#include <massxpert/gui/MassSearchOligomerTableViewModel.hpp>
#include <massxpert/gui/MassSearchOligomerTableViewSortProxyModel.hpp>


namespace msXpSmassXpert
{

class MassSearchOligomerTableViewModel;
class MassSearchOligomerTableViewSortProxyModel;

class MassSearchDlg : public AbstractSeqEdWndDependentDlg
{
  Q_OBJECT

  private:
  Ui::MassSearchDlg m_ui;

  // The results-exporting strings. ////////////////////////////////
  QString *mpa_resultsString;
  QString m_resultsFilePath;
  //////////////////////////////////// The results-exporting strings.

  CalcOptions m_calcOptions;
  msXpSlibmass::IonizeRule *mp_ionizeRule;

  double m_monoTolerance;
  double m_avgTolerance;

  double m_currentMass;
  int m_foundOligosCount;
  int m_testedOligosCount;
  int m_progressValue;

  int m_ionizeStart;
  int m_ionizeEnd;

  bool m_abort;
  bool m_sequenceEmbedded;

  // For the filtering of the data in the treeview.
  QAction *monoFilterAct;
  QAction *avgFilterAct;
  double m_filterTolerance;
  QWidget *mp_monoFocusWidget;
  QWidget *mp_avgFocusWidget;

  QList<double> m_monoMassesList;
  QList<double> m_avgMassesList;

  OligomerList m_monoOligomerList;
  OligomerList m_avgOligomerList;

  MassSearchOligomerTableViewModel *mpa_monoOligomerTableViewModel;
  MassSearchOligomerTableViewModel *mpa_avgOligomerTableViewModel;

  MassSearchOligomerTableViewSortProxyModel *mpa_monoProxyModel;
  MassSearchOligomerTableViewSortProxyModel *mpa_avgProxyModel;

  void writeSettings();
  void readSettings();

  public:
  MassSearchDlg(SequenceEditorWnd *editorWnd,
                Polymer *polymer,
                /* no PolChemDef **/
                const QString &configSettingsFilePath,
                const CalcOptions &calcOptions,
                msXpSlibmass::IonizeRule *ionizeRule);

  ~MassSearchDlg();

  bool initialize();

  bool populateSelectedOligomerData();
  bool populateToleranceTypeComboBoxes();
  void setupTableViews();

  void updateIonizationData();
  void updateProgressDetails(int, bool = false, Oligomer * = 0);

  void updateMassSearchDetails(const CalcOptions &);
  void updateOligomerSequence(QString *);

  bool checkTolerance(int type);
  bool calculateTolerance(double, int);
  bool calculateFilterTolerance(double, int);

  bool parseMassText(int);
  bool searchMasses(int);
  bool searchMass(double, const Coordinates &, int);

  void freeAllOligomerLists();
  void emptyAllMassLists();

  bool updateSelectionData(bool = true);

  // The results-exporting functions. ////////////////////////////////
  void prepareResultsTxtString();
  bool exportResultsClipboard();
  bool exportResultsFile();
  bool selectResultsFile();
  //////////////////////////////////// The results-exporting functions.

  public slots:

  void updateWholeSelectedSequenceData();

  void search();
  void abort();

  void exportResults(int);

  // MONO set of filtering widgets
  void monoFilterOptions(bool);
  void monoFilterOptionsToggled();

  void monoFilterSearched();
  void monoFilterError();
  void monoFilterMonoMass();
  void monoFilterAvgMass();

  // AVG set of filtering widgets
  void avgFilterOptions(bool);
  void avgFilterOptionsToggled();

  void avgFilterSearched();
  void avgFilterError();
  void avgFilterMonoMass();
  void avgFilterAvgMass();
};

} // namespace msXpSmassXpert


#endif // MASS_SEARCH_DLG_HPP
