# macsyfinder 20220112.dev
# models : functional-0.0b2
# /home/bneron/Projects/GEM/MacSyFinder/MacSyFinder/py39/bin/macsyfinder --db-type ordered_replicon --replicon-topology linear --models-dir tests/data/models/ -m functional T12SS-multisystem --relative-path --sequence-db tests/data/base/test_13.fasta -w 15 -o functional_test_multi_system
# Systems found:

system id = UserReplicon_T12SS-multisystem_3
model = functional/T12SS-multisystem
replicon = UserReplicon
clusters = [('VICH001.B.00001.C001_01397', 'T1SS_abc', 8), ('VICH001.B.00001.C001_01398', 'T1SS_mfp', 9)], [('VICH001.B.00001.C001_01506', 'T1SS_omf', 35)]
occ = 1
wholeness = 0.600
loci nb = 2
score = 2.200

mandatory genes:
	- T1SS_abc: 1 (T1SS_abc)
	- T2SS_gspD: 0 ()
	- T1SS_omf: 1 (T1SS_omf)

accessory genes:
	- T1SS_mfp: 1 (T1SS_mfp)
	- T2SS_gspF: 0 ()

neutral genes:

============================================================
system id = UserReplicon_T12SS-multisystem_1
model = functional/T12SS-multisystem
replicon = UserReplicon
clusters = [('VICH001.B.00001.C001_01400', 'T2SS_gspD', 19), ('VICH001.B.00001.C001_01360', 'T1SS_omf', 20), ('VICH001.B.00001.C001_02599', 'T2SS_gspF', 21)]
occ = 1
wholeness = 0.600
loci nb = 1
score = 2.500

mandatory genes:
	- T1SS_abc: 0 ()
	- T2SS_gspD: 1 (T2SS_gspD)
	- T1SS_omf: 1 (T1SS_omf)

accessory genes:
	- T1SS_mfp: 0 ()
	- T2SS_gspF: 1 (T2SS_gspF)

neutral genes:

============================================================
system id = UserReplicon_T12SS-multisystem_2
model = functional/T12SS-multisystem
replicon = UserReplicon
clusters = [('VICH001.B.00001.C001_01399', 'T1SS_abc', 34), ('VICH001.B.00001.C001_01506', 'T1SS_omf', 35), ('VICH001.B.00001.C001_00409', 'T2SS_gspD', 36)]
occ = 1
wholeness = 0.600
loci nb = 1
score = 3.000

mandatory genes:
	- T1SS_abc: 1 (T1SS_abc)
	- T2SS_gspD: 1 (T2SS_gspD)
	- T1SS_omf: 1 (T1SS_omf)

accessory genes:
	- T1SS_mfp: 0 ()
	- T2SS_gspF: 0 ()

neutral genes:

============================================================
