.gitattributes
.gitignore
bin/pheno-ranker
Changes
cpanfile
Dockerfile
lib/Pheno/Ranker.pm
lib/Pheno/Ranker/Compare.pm
lib/Pheno/Ranker/Graph.pm
lib/Pheno/Ranker/IO.pm
lib/Pheno/Ranker/Metrics.pm
LICENSE
Makefile.PL
MANIFEST			This list of files
mkdocs.yml
requirements.txt
share/conf/config.yaml
share/db/hp.json
share/db/README.md
share/diseases/hpo/omim.bff.json.gz
share/diseases/hpo/omim.pxf.json.gz
share/diseases/hpo/orpha.bff.json.gz
share/diseases/hpo/orpha.pxf.json.gz
share/diseases/hpo/README.md
share/diseases/hpo/scripts/hpo_disease_converter.pl
t/cars.json
t/cars_config.yaml
t/cars_matrix.txt
t/cli.t
t/csv.t
t/die.t
t/example.csv
t/example_config_ref.yaml
t/example_ref.json
t/export.coverage_stats.json
t/export.glob_hash.json
t/export.ref_binary_hash.json
t/export.ref_hash.json
t/graph.json
t/graph.t
t/graph_stats.txt
t/individuals.json
t/individuals.json.gz
t/individuals_random_100.json
t/individuals_random_100_ontologies.json
t/inter_cohort_matrix_ref.txt
t/interpretations_pxf.json
t/json.t
t/matrix_ref.txt
t/matrix_ref_interpretations_pxf.txt
t/matrix_ref_jaccard.txt
t/matrix_ref_weights_zero.txt
t/movies.json
t/movies_config.yaml
t/movies_weights.yaml
t/ontologies.yaml
t/output.json
t/patient.json
t/pxf_excluded_true.json
t/pxf_excluded_true_matrix.txt
t/pxf_random_100.json
t/qr_codes/107_week_0_arm_1.compressed.png
t/qr_codes/107_week_0_arm_1.pdf
t/qr_codes/107_week_0_arm_1.png
t/qr_codes/output.compressed.json
t/qr_codes/output.json
t/qr_codes/pdf/107_week_0_arm_1.pdf
t/rank.txt
t/ref_align.csv
t/ref_align.target.csv
t/ref_align.txt
t/ref_movies_include_matrix.txt
t/ref_movies_matrix.txt
t/ref_movies_weights_matrix.txt
t/sim.t
t/weights.t
t/weights.yaml
t/weights_err1.yaml
t/weights_err2.yaml
t/weights_zero.yaml
utils/bff_pxf_simulator/bff-pxf-simulator
utils/bff_pxf_simulator/cpanfile
utils/bff_pxf_simulator/Ontologies.pm
utils/bff_pxf_simulator/ontologies.yaml
utils/bff_pxf_simulator/pm2yaml.pl
utils/bff_pxf_simulator/README.md
utils/csv2pheno_ranker/cpanfile
utils/csv2pheno_ranker/csv2pheno-ranker
utils/csv2pheno_ranker/README.md
utils/csv2pheno_ranker/vcf/vcf2pheno-ranker.py
VERSION
xt/plot.t
xt/plot/bff.png
xt/plot/pxf.png
xt/poi.t
xt/poi/107:week_0_arm_1.json
META.yml                                 Module YAML meta-data (added by MakeMaker)
META.json                                Module JSON meta-data (added by MakeMaker)
